Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_C22
         (75 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817...    38   0.001
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227...    36   0.003
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392...    36   0.003
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554...    26   3.7  

>07_01_0971 +
           8169197-8169311,8170351-8170458,8170533-8170725,
           8170811-8171069,8171151-8171207,8171433-8171480,
           8171571-8171657,8171743-8171800,8171891-8171958,
           8172066-8172161,8172244-8172291,8172658-8172696,
           8172782-8172868,8173136-8173147
          Length = 424

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = +2

Query: 26  PDASKPEDWDDEMDGE 73
           PDA KPEDWDDE DGE
Sbjct: 256 PDAKKPEDWDDEEDGE 271



 Score = 28.3 bits (60), Expect = 0.91
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +2

Query: 26  PDASKPEDWDDE 61
           P+A KPEDWDD+
Sbjct: 221 PEAKKPEDWDDK 232


>04_03_0812 -
           19922208-19922357,19922448-19922564,19922681-19922752,
           19922864-19923993,19924939-19925008,19925125-19925199
          Length = 537

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +2

Query: 26  PDASKPEDWDDEMDGE 73
           P+A+KPEDWDDE DGE
Sbjct: 277 PEANKPEDWDDEEDGE 292



 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 26  PDASKPEDWDDE 61
           PDA KP+DWD++
Sbjct: 239 PDAVKPDDWDED 250



 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 26  PDASKPEDWDD 58
           PD  KPEDWD+
Sbjct: 222 PDDKKPEDWDE 232


>03_06_0563 -
           34738732-34738890,34738965-34739009,34739154-34739201,
           34739291-34739386,34739467-34739534,34739633-34739690,
           34739783-34739869,34740004-34740051,34740360-34740416,
           34740525-34740783,34740877-34741102,34741168-34741275,
           34741885-34741987
          Length = 453

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +2

Query: 26  PDASKPEDWDDEMDGE 73
           P+A+KPEDWDDE DGE
Sbjct: 263 PEATKPEDWDDEEDGE 278



 Score = 27.9 bits (59), Expect = 1.2
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 26  PDASKPEDWDD 58
           P+A KPEDWDD
Sbjct: 228 PEAKKPEDWDD 238


>05_06_0014 +
           24854462-24854570,24854958-24855065,24855240-24855432,
           24855892-24856150,24856236-24856292,24856370-24856417,
           24856725-24856811,24856885-24856942,24857084-24857151,
           24857279-24857374,24857483-24857539,24857906-24857952,
           24858184-24858210,24858312-24858504
          Length = 468

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 26  PDASKPEDWDDEMDG 70
           P   KPE WDD+ DG
Sbjct: 254 PKDKKPESWDDDDDG 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,150,842
Number of Sequences: 37544
Number of extensions: 15579
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 14,793,348
effective HSP length: 6
effective length of database: 14,568,084
effective search space used: 262225512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)