Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_C21
         (197 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   1.0  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    24   2.4  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    23   4.2  
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    23   5.6  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    23   7.4  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    23   7.4  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    23   7.4  
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz...    22   9.7  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    22   9.7  

>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 22  FGTRRSTLDELATLADTVNDVIGQPQVQEMSNTTPNAEISELRQSIA 162
           FGT R  LD++A  AD V  +        +SN  P+A +S+   +++
Sbjct: 108 FGTSR--LDDVAPNADGVRRLRTSGSSTGLSNAPPSANVSKASSNLS 152


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = +1

Query: 127 NAEIS--ELRQSIAELTRQVAAL 189
           NAE+S  ELR +I +L RQ+A+L
Sbjct: 25  NAELSFSELRIAIMDLQRQIASL 47


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 13  LQVFGTRRSTLDELATLADTVNDVIGQPQVQEMSN 117
           L+    RR+  DE+ATL    N  +    ++ +SN
Sbjct: 445 LEYENQRRAFCDEVATLLKEKNSSVSSESLEVLSN 479


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 79  DVIGQPQVQEMSNTTPNAEI 138
           D I Q ++QE SNT PN  I
Sbjct: 4   DQIRQLRLQESSNTHPNLAI 23


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 31  RRSTLDELATLADTVNDVIGQPQVQEMSNTTPNAEISELR 150
           R+  LDE   LA+  N VIG     E       ++I +LR
Sbjct: 285 RKQILDEYGLLANDENLVIGHTLRAEYCFMFDESDILQLR 324


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 144 ITPVYSGVDSASSCIIY 194
           IT VYSG D  SS  I+
Sbjct: 693 ITRVYSGTDDGSSVSIF 709


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/51 (19%), Positives = 24/51 (47%)
 Frame = +1

Query: 43  LDELATLADTVNDVIGQPQVQEMSNTTPNAEISELRQSIAELTRQVAALST 195
           ++EL T  + ++ ++GQ    E +  +   +     + ++E +     LST
Sbjct: 105 INELQTFTNIIDQILGQTNNIESTLLSMKEKFESSEKKLSEFSEMCENLST 155


>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
           Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 91  QPQVQEMSNTTPNAEISELRQSI 159
           Q Q +     TP+++ISEL +SI
Sbjct: 145 QEQSKRRKQETPSSKISELDRSI 167


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 82  VIGQPQVQEMSNTTPNAEISEL 147
           +I  P   E S TTP  E+S L
Sbjct: 1   MISVPLQNENSTTTPTKEVSHL 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.308    0.123    0.318 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 723,798
Number of Sequences: 5004
Number of extensions: 9549
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)