Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_C21
         (197 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022655-1|AAC06349.1| 2442|Homo sapiens cep250 centrosome assoc...    28   6.4  
BC117183-1|AAI17184.1|  926|Homo sapiens SNF1-like kinase 2 prot...    27   8.4  
BC113459-1|AAI13460.1|  926|Homo sapiens SNF1-like kinase 2 prot...    27   8.4  
BC078150-1|AAH78150.1|  711|Homo sapiens SNF1LK2 protein protein.      27   8.4  
BC013612-1|AAH13612.1|  335|Homo sapiens SNF1LK2 protein protein.      27   8.4  
AB018324-1|BAA34501.3|  950|Homo sapiens KIAA0781 protein protein.     27   8.4  

>AF022655-1|AAC06349.1| 2442|Homo sapiens cep250 centrosome
           associated protein protein.
          Length = 2442

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 40  TLDELATLADTVNDVIGQPQVQEMSNTTPNAEISELRQSIAELTRQVAALST 195
           +L EL TL + +  +  + ++     T   A ++   QSIAEL+     L T
Sbjct: 538 SLSELITLREALESIHLEGELLRQEQTEVTAALARAEQSIAELSSSENTLKT 589


>BC117183-1|AAI17184.1|  926|Homo sapiens SNF1-like kinase 2
           protein.
          Length = 926

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/29 (31%), Positives = 21/29 (72%)
 Frame = +1

Query: 94  PQVQEMSNTTPNAEISELRQSIAELTRQV 180
           PQ+Q+++++ P  E+S+ ++S++ L   V
Sbjct: 637 PQLQDLASSCPQEEVSQQQESVSTLPASV 665


>BC113459-1|AAI13460.1|  926|Homo sapiens SNF1-like kinase 2
           protein.
          Length = 926

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/29 (31%), Positives = 21/29 (72%)
 Frame = +1

Query: 94  PQVQEMSNTTPNAEISELRQSIAELTRQV 180
           PQ+Q+++++ P  E+S+ ++S++ L   V
Sbjct: 637 PQLQDLASSCPQEEVSQQQESVSTLPASV 665


>BC078150-1|AAH78150.1|  711|Homo sapiens SNF1LK2 protein protein.
          Length = 711

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/29 (31%), Positives = 21/29 (72%)
 Frame = +1

Query: 94  PQVQEMSNTTPNAEISELRQSIAELTRQV 180
           PQ+Q+++++ P  E+S+ ++S++ L   V
Sbjct: 422 PQLQDLASSCPQEEVSQQQESVSTLPASV 450


>BC013612-1|AAH13612.1|  335|Homo sapiens SNF1LK2 protein protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/29 (31%), Positives = 21/29 (72%)
 Frame = +1

Query: 94  PQVQEMSNTTPNAEISELRQSIAELTRQV 180
           PQ+Q+++++ P  E+S+ ++S++ L   V
Sbjct: 46  PQLQDLASSCPQEEVSQQQESVSTLPASV 74


>AB018324-1|BAA34501.3|  950|Homo sapiens KIAA0781 protein protein.
          Length = 950

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/29 (31%), Positives = 21/29 (72%)
 Frame = +1

Query: 94  PQVQEMSNTTPNAEISELRQSIAELTRQV 180
           PQ+Q+++++ P  E+S+ ++S++ L   V
Sbjct: 661 PQLQDLASSCPQEEVSQQQESVSTLPASV 689


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.308    0.123    0.318 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,491,470
Number of Sequences: 237096
Number of extensions: 367253
Number of successful extensions: 499
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 76,859,062
effective HSP length: 44
effective length of database: 66,426,838
effective search space used: 1394963598
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)