Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_C21
(197 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106577-11|AAC78185.1| 322|Caenorhabditis elegans Hypothetical... 29 0.34
AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical ... 26 4.2
Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z93398-4|CAH04743.1| 4410|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z92788-4|CAH04711.1| 4410|Caenorhabditis elegans Hypothetical pr... 25 5.6
AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical ... 25 5.6
AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical ... 25 5.6
AL031637-2|CAH04759.1| 4410|Caenorhabditis elegans Hypothetical ... 25 5.6
AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B prote... 25 5.6
AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B prote... 25 5.6
>AF106577-11|AAC78185.1| 322|Caenorhabditis elegans Hypothetical
protein F46F5.5 protein.
Length = 322
Score = 29.5 bits (63), Expect = 0.34
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +1
Query: 97 QVQEMSNTTPNAEISELRQSIAELTRQVA 183
Q+ ++SNTTP+ I + R+S +E TR+ A
Sbjct: 79 QILQLSNTTPSPIIEDKRRSTSEPTRRQA 107
>AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical
protein R155.3 protein.
Length = 1165
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +1
Query: 46 DELATLADTVNDVIGQPQVQEMSNTTPNAEISELRQSIAELTRQVAAL 189
D++ATL +++++G P V+ T+ ++ + +A+L Q+ AL
Sbjct: 242 DKIATLPSKIHEILGTPSVK--LPTSDKDKVDKAIPLMAQLPAQLKAL 287
>Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 25.4 bits (53), Expect = 5.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 37 STLDELATLADTVN-DVIGQPQVQEMSNTTPNAEISELRQSIAELTRQVAA 186
S DEL D ++ ++ P V + TP AE+ E+ EL R VAA
Sbjct: 3435 SQFDELNKWLDQMDAELQASPSV---TTATPAAELREMHDHNEELARMVAA 3482
>Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 25.4 bits (53), Expect = 5.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 37 STLDELATLADTVN-DVIGQPQVQEMSNTTPNAEISELRQSIAELTRQVAA 186
S DEL D ++ ++ P V + TP AE+ E+ EL R VAA
Sbjct: 3435 SQFDELNKWLDQMDAELQASPSV---TTATPAAELREMHDHNEELARMVAA 3482
>Z93398-4|CAH04743.1| 4410|Caenorhabditis elegans Hypothetical protein
ZK1151.1g protein.
Length = 4410
Score = 25.4 bits (53), Expect = 5.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 37 STLDELATLADTVN-DVIGQPQVQEMSNTTPNAEISELRQSIAELTRQVAA 186
S DEL D ++ ++ P V + TP AE+ E+ EL R VAA
Sbjct: 2890 SQFDELNKWLDQMDAELQASPSV---TTATPAAELREMHDHNEELARMVAA 2937
>Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 25.4 bits (53), Expect = 5.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 37 STLDELATLADTVN-DVIGQPQVQEMSNTTPNAEISELRQSIAELTRQVAA 186
S DEL D ++ ++ P V + TP AE+ E+ EL R VAA
Sbjct: 3435 SQFDELNKWLDQMDAELQASPSV---TTATPAAELREMHDHNEELARMVAA 3482
>Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 25.4 bits (53), Expect = 5.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 37 STLDELATLADTVN-DVIGQPQVQEMSNTTPNAEISELRQSIAELTRQVAA 186
S DEL D ++ ++ P V + TP AE+ E+ EL R VAA
Sbjct: 3435 SQFDELNKWLDQMDAELQASPSV---TTATPAAELREMHDHNEELARMVAA 3482
>Z92788-4|CAH04711.1| 4410|Caenorhabditis elegans Hypothetical protein
ZK1151.1g protein.
Length = 4410
Score = 25.4 bits (53), Expect = 5.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 37 STLDELATLADTVN-DVIGQPQVQEMSNTTPNAEISELRQSIAELTRQVAA 186
S DEL D ++ ++ P V + TP AE+ E+ EL R VAA
Sbjct: 2890 SQFDELNKWLDQMDAELQASPSV---TTATPAAELREMHDHNEELARMVAA 2937
>AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical
protein ZK1151.1c protein.
Length = 4955
Score = 25.4 bits (53), Expect = 5.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 37 STLDELATLADTVN-DVIGQPQVQEMSNTTPNAEISELRQSIAELTRQVAA 186
S DEL D ++ ++ P V + TP AE+ E+ EL R VAA
Sbjct: 3435 SQFDELNKWLDQMDAELQASPSV---TTATPAAELREMHDHNEELARMVAA 3482
>AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical
protein ZK1151.1b protein.
Length = 4944
Score = 25.4 bits (53), Expect = 5.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 37 STLDELATLADTVN-DVIGQPQVQEMSNTTPNAEISELRQSIAELTRQVAA 186
S DEL D ++ ++ P V + TP AE+ E+ EL R VAA
Sbjct: 3435 SQFDELNKWLDQMDAELQASPSV---TTATPAAELREMHDHNEELARMVAA 3482
>AL031637-2|CAH04759.1| 4410|Caenorhabditis elegans Hypothetical
protein ZK1151.1g protein.
Length = 4410
Score = 25.4 bits (53), Expect = 5.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 37 STLDELATLADTVN-DVIGQPQVQEMSNTTPNAEISELRQSIAELTRQVAA 186
S DEL D ++ ++ P V + TP AE+ E+ EL R VAA
Sbjct: 2890 SQFDELNKWLDQMDAELQASPSV---TTATPAAELREMHDHNEELARMVAA 2937
>AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B protein
protein.
Length = 3522
Score = 25.4 bits (53), Expect = 5.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 37 STLDELATLADTVN-DVIGQPQVQEMSNTTPNAEISELRQSIAELTRQVAA 186
S DEL D ++ ++ P V + TP AE+ E+ EL R VAA
Sbjct: 3435 SQFDELNKWLDQMDAELQASPSV---TTATPAAELREMHDHNEELARMVAA 3482
>AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B protein
protein.
Length = 4944
Score = 25.4 bits (53), Expect = 5.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 37 STLDELATLADTVN-DVIGQPQVQEMSNTTPNAEISELRQSIAELTRQVAA 186
S DEL D ++ ++ P V + TP AE+ E+ EL R VAA
Sbjct: 3435 SQFDELNKWLDQMDAELQASPSV---TTATPAAELREMHDHNEELARMVAA 3482
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.308 0.123 0.318
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,170,066
Number of Sequences: 27780
Number of extensions: 56796
Number of successful extensions: 117
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 12,740,198
effective HSP length: 45
effective length of database: 11,490,098
effective search space used: 229801960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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