Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_C21
         (197 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   1.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    19   5.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    19   5.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    19   7.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             19   7.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    18   9.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      18   9.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    18   9.9  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = +1

Query: 13  LQVFGTRRSTLDELATLADTVNDVIGQPQVQEMSNTTPNAEISEL 147
           L V      T  ++     TVND++ +     + N   N E ++L
Sbjct: 9   LDVSSAASKTSSKVMLTRGTVNDIVSRNITMVLENLLMNYENNQL 53


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
          beta-synthase protein.
          Length = 504

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 30 RAEYLQPGGS 1
          + E+L PGGS
Sbjct: 67 KCEFLNPGGS 76


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +1

Query: 10  GLQVFGTRRSTLDELATLADTVNDV-IGQPQVQEMSNTTPNAEIS 141
           G+Q       TLD+L T  D V  V IG   + +  N T   E+S
Sbjct: 142 GVQALEAMLYTLDKLNT-QDIVPGVRIGAHILDDCDNDTYGLEMS 185


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 55  ATLADTVNDVIGQPQ 99
           ATLAD + + I  PQ
Sbjct: 208 ATLADQIKNGIVSPQ 222


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 55  ATLADTVNDVIGQPQ 99
           ATLAD + + I  PQ
Sbjct: 203 ATLADQIKNGIVSPQ 217


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 173 RVNSAIDWRNSLISALGVV 117
           R NSA     ++IS LG+V
Sbjct: 510 RWNSAFAIAPAVISCLGIV 528


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -2

Query: 91  DR*RRSPYQRALLAHPECSASCRILA 14
           D   R+P    L A    S+SC  +A
Sbjct: 320 DASERNPRSAVLAAREITSSSCSYMA 345


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 173 RVNSAIDWRNSLISALGVV 117
           R NSA     ++IS LG+V
Sbjct: 600 RWNSAFAIAPAVISCLGIV 618


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.308    0.123    0.318 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,703
Number of Sequences: 438
Number of extensions: 668
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2668491
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.6 bits)