Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_C20
(432 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 137 6e-34
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 137 6e-34
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 44 1e-05
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 1.2
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 27 1.2
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch... 26 2.2
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p... 26 2.8
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 25 5.0
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 25 5.0
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 6.6
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 24 8.7
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 24 8.7
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 137 bits (332), Expect = 6e-34
Identities = 65/81 (80%), Positives = 72/81 (88%)
Frame = +2
Query: 188 KKLAVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAV 367
+K+ VEAKQPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEV ++GFGRKG A
Sbjct: 53 EKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAK 112
Query: 368 GDIPGVRFEVVKVANVSLLAL 430
GDIPGVRF+VVKVA V L AL
Sbjct: 113 GDIPGVRFKVVKVAGVGLSAL 133
Score = 86.6 bits (205), Expect = 1e-18
Identities = 36/56 (64%), Positives = 46/56 (82%)
Frame = +1
Query: 31 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVG 198
MGKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+G
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIG 56
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 137 bits (332), Expect = 6e-34
Identities = 65/81 (80%), Positives = 72/81 (88%)
Frame = +2
Query: 188 KKLAVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAV 367
+K+ VEAKQPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEV ++GFGRKG A
Sbjct: 53 EKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAK 112
Query: 368 GDIPGVRFEVVKVANVSLLAL 430
GDIPGVRF+VVKVA V L AL
Sbjct: 113 GDIPGVRFKVVKVAGVGLSAL 133
Score = 86.6 bits (205), Expect = 1e-18
Identities = 36/56 (64%), Positives = 46/56 (82%)
Frame = +1
Query: 31 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVG 198
MGKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+G
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIG 56
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 44.0 bits (99), Expect = 1e-05
Identities = 29/77 (37%), Positives = 46/77 (59%)
Frame = +2
Query: 173 RASSSKKLAVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGR 352
R ++ V+ K+PNSA+RK RV+L G+ VTA++P G ++ +E+ V + G GR
Sbjct: 52 RGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLLRG-GR 107
Query: 353 KGHAVGDIPGVRFEVVK 403
D PGV++ VV+
Sbjct: 108 ----AQDCPGVQYHVVR 120
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 27.1 bits (57), Expect = 1.2
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -1
Query: 417 DTFATLTTSNLTPGMSPTAWP 355
DT+AT T N PT WP
Sbjct: 1157 DTYATFQTLNYIQNQQPTKWP 1177
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 27.1 bits (57), Expect = 1.2
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 83 ASSDGPTRNSKKPTWVRDGRRTPSVVHLMLRASSSKKLAVEAK 211
A+S+ P + KK RRT S +H +L A S++ EAK
Sbjct: 118 AASEVPKKKYKKIKVDPSARRTSSRMHTVLMAQSTETRLQEAK 160
>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 257
Score = 26.2 bits (55), Expect = 2.2
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -1
Query: 249 CTRTHLRMAEFGCLASTANFFEDDALSMRCTTEGVRLPSRT 127
C + +L++ + A +++FE + + + CT G R PS+T
Sbjct: 35 CRKIYLKLG-WATKAVGSSYFESEKIKIACTVSGPR-PSKT 73
>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 254
Score = 25.8 bits (54), Expect = 2.8
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +2
Query: 77 IVASSDGPTRNSKKPTWVRDGRRTPSVVHLMLRASSSKKLAVEAKQPNSAIRKCVRVQLI 256
+ AS+ GP S+ W +T S VH++ +S + A +A + KC+ V +
Sbjct: 34 VFASARGPGSASELKDW----SKTHSNVHIIKLDVTSLRSAKDAAMQVEKVVKCIDVLWV 89
Query: 257 KNG 265
+G
Sbjct: 90 NSG 92
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 25.0 bits (52), Expect = 5.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 415 HVCYLNHLKSDSRNVTNSVAFTTESCHSHLIV 320
HV +LNH+ N N +A + E S LIV
Sbjct: 47 HVDFLNHIHLLLGNYNNDLASSIEKKKSELIV 78
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 25.0 bits (52), Expect = 5.0
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -3
Query: 409 CYLNHLKSDSRNVTNSVAFTTESCHSHL 326
C N+L ++ S + SCHSH+
Sbjct: 508 CITNNLNENTLKKLASAIYNDRSCHSHV 535
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 24.6 bits (51), Expect = 6.6
Identities = 13/58 (22%), Positives = 28/58 (48%)
Frame = -3
Query: 409 CYLNHLKSDSRNVTNSVAFTTESCHSHLIVLLNVVEATITRHECCHFLAVLNELYTNT 236
C +N L + R+ +++ F + H L++ + + I ++C L + L TN+
Sbjct: 1020 CLINELGPNLRSDSSTSHFAFDLAHQLLLLSRDTGDNIIHVYKCYQHLYLFTPLETNS 1077
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 24.2 bits (50), Expect = 8.7
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +1
Query: 94 WADKEFKKAHMGTRWKANPFGGASHAKGIV 183
W D EF H ++ PF +H K V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 24.2 bits (50), Expect = 8.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 374 CHQQRGLYDRILPLTP 327
C + R LYD++ P+TP
Sbjct: 322 CDEARLLYDQLTPITP 337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,901,797
Number of Sequences: 5004
Number of extensions: 39721
Number of successful extensions: 127
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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