Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_C20
(432 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 145 2e-35
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 145 2e-35
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 83 9e-17
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 50 1e-06
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 31 0.30
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 31 0.30
05_04_0148 - 18426903-18427106,18430516-18430594,18430752-184309... 29 1.2
06_03_0416 + 20568087-20568702,20568767-20570313 28 2.8
02_02_0401 + 9847398-9847463,9848916-9849019,9849873-9849876,984... 28 3.7
02_01_0743 - 5530184-5531078,5531160-5531405,5531815-5532450,553... 28 3.7
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293 27 4.9
10_01_0086 - 1064650-1065379,1065796-1065950,1066029-1066141,106... 27 6.5
08_01_0378 + 3360215-3360253,3360326-3360437,3362176-3362213,336... 27 6.5
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 27 6.5
03_03_0060 - 14157352-14158851 27 6.5
12_02_0675 + 21814048-21814368 27 8.6
12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311 27 8.6
06_01_0267 - 1972988-1973148,1973275-1973403,1973881-1974024,197... 27 8.6
04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900... 27 8.6
03_06_0741 + 35893538-35895600,35896274-35896474,35896701-358968... 27 8.6
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92... 27 8.6
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 145 bits (351), Expect = 2e-35
Identities = 66/81 (81%), Positives = 74/81 (91%)
Frame = +2
Query: 188 KKLAVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAV 367
+K+ +EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEV +AGFGRKGHAV
Sbjct: 52 EKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAV 111
Query: 368 GDIPGVRFEVVKVANVSLLAL 430
GDIPGVRF+VVKV+ VSLLAL
Sbjct: 112 GDIPGVRFKVVKVSGVSLLAL 132
Score = 83.0 bits (196), Expect = 9e-17
Identities = 36/56 (64%), Positives = 42/56 (75%)
Frame = +1
Query: 31 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVG 198
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIG 55
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 145 bits (351), Expect = 2e-35
Identities = 66/81 (81%), Positives = 74/81 (91%)
Frame = +2
Query: 188 KKLAVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAV 367
+K+ +EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEV +AGFGRKGHAV
Sbjct: 52 EKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAV 111
Query: 368 GDIPGVRFEVVKVANVSLLAL 430
GDIPGVRF+VVKV+ VSLLAL
Sbjct: 112 GDIPGVRFKVVKVSGVSLLAL 132
Score = 145 bits (351), Expect = 2e-35
Identities = 66/81 (81%), Positives = 74/81 (91%)
Frame = +2
Query: 188 KKLAVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAV 367
+K+ +EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEV +AGFGRKGHAV
Sbjct: 222 EKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAV 281
Query: 368 GDIPGVRFEVVKVANVSLLAL 430
GDIPGVRF+VVKV+ VSLLAL
Sbjct: 282 GDIPGVRFKVVKVSGVSLLAL 302
Score = 84.6 bits (200), Expect = 3e-17
Identities = 39/65 (60%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Frame = +1
Query: 7 GD-RVRAIVMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIV 183
GD R ++ MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIV
Sbjct: 162 GDLRCPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIV 220
Query: 184 LEKVG 198
LEK+G
Sbjct: 221 LEKIG 225
Score = 83.0 bits (196), Expect = 9e-17
Identities = 36/56 (64%), Positives = 42/56 (75%)
Frame = +1
Query: 31 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVG 198
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIG 55
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 83.0 bits (196), Expect = 9e-17
Identities = 43/81 (53%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +1
Query: 7 GDRVRAIVMG-KPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIV 183
G+RVRA G K G+ RK HRR QRWADK +KK+H G WK PF G+SHAKGIV
Sbjct: 63 GERVRAWSCGAKTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIV 121
Query: 184 LEKVGC*SQAAEFSHS*VCSC 246
LEK+G A+ +S +C C
Sbjct: 122 LEKIGI---EAKQPNSAICKC 139
Score = 79.8 bits (188), Expect = 9e-16
Identities = 35/52 (67%), Positives = 42/52 (80%)
Frame = +2
Query: 188 KKLAVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAG 343
+K+ +EAKQPNSAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 123 EKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 49.6 bits (113), Expect = 1e-06
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +2
Query: 323 DEV*VAGFGRKGHAVGDIPGVRFEVVK 403
DEV ++GFG KGHAVGDI GVRFEVVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 31.5 bits (68), Expect = 0.30
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 6 RRSCSRYRNG*TSGYSHGAQARESSSRAAMGRQGIQKSP 122
+R+C R +G +GY HG + + SSR + R G+ +P
Sbjct: 183 KRACYRV-HGMATGYCHGCRCQRCSSRPSRDRDGVAWAP 220
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 31.5 bits (68), Expect = 0.30
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -1
Query: 231 RMAEFGCLASTANFFEDDALSMRCTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRA 52
++ GC A T DA S+ T ++P H+ + +G S A ++ VLAR A
Sbjct: 160 QLTAVGCWALTEPNHGSDASSL--ITTATKVPGGWHIDGQKRWIGNSTFADVLVVLARNA 217
Query: 51 NTPRFTHY 28
NT + +
Sbjct: 218 NTKQLNGF 225
>05_04_0148 -
18426903-18427106,18430516-18430594,18430752-18430935,
18431020-18431063,18432028-18432165,18432713-18434511
Length = 815
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -1
Query: 408 ATLTTSNLTP-GMSPTAWPLRPNPATHTSSFSSMWLRQPSRGTNAVTFLPFLMSCTRT 238
+T T+S+ P SP+ P+P +T + S++ R P RG+ L +L+ T
Sbjct: 16 STSTSSSSPPDSASPSFSFYHPSPPNYTLAVSNLSCRDPRRGSGGAGLLSWLLGSFST 73
>06_03_0416 + 20568087-20568702,20568767-20570313
Length = 720
Score = 28.3 bits (60), Expect = 2.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 245 HEHTYEWLNSAAWLQQPTFSRTMPLA 168
H Y+W+N +AW+ F T P A
Sbjct: 250 HMRLYQWINYSAWVPSDIFDITDPCA 275
>02_02_0401 +
9847398-9847463,9848916-9849019,9849873-9849876,
9849968-9851230
Length = 478
Score = 27.9 bits (59), Expect = 3.7
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 6 RRSCSRYRNG*TSGYSHGAQARESSSRAAMGRQG 107
+R+ S+Y+ G +S Y GA ++ ++ +QG
Sbjct: 282 QRTSSKYKQGASSKYKQGASSKSKQGTSSKSKQG 315
>02_01_0743 -
5530184-5531078,5531160-5531405,5531815-5532450,
5534499-5534607,5536157-5536321,5536446-5536543,
5536648-5536898
Length = 799
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 282 SCRVMVASTTLRRTMRCEWQDSVVKATLLVTFLESD 389
SC + L RT+R +W + +++ L+ T +E D
Sbjct: 581 SCPHVAGVVGLLRTLRPDWSPAAIRSALMTTAVEVD 616
>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
Length = 352
Score = 27.5 bits (58), Expect = 4.9
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = -1
Query: 405 TLTTSNLTPGMSPTAWPLRPNPATHTSSFSSMWLRQPSRGTNAV 274
TL+ NL G SP P P P SM + QP TN V
Sbjct: 254 TLSGLNLNLGSSPAMPPPPPPPPQSILQAMSMPMNQPRSTTNQV 297
>10_01_0086 -
1064650-1065379,1065796-1065950,1066029-1066141,
1066238-1066345,1066773-1066890,1066996-1067069,
1067595-1067690,1068062-1068455
Length = 595
Score = 27.1 bits (57), Expect = 6.5
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 402 LTTSNLTPGMSPTAWPLRP-NPATHTSSFSSMWLRQPSRGTNAVT 271
L T LTP P A PLRP N A H SS + + PS AV+
Sbjct: 398 LITPPLTPPPMPWAAPLRPGNIAIHPSSPKQL-VYNPSNRVPAVS 441
>08_01_0378 +
3360215-3360253,3360326-3360437,3362176-3362213,
3363949-3363966,3364629-3364847,3364937-3366727,
3367764-3367827,3367915-3367975,3368685-3368694
Length = 783
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = -3
Query: 388 SDS-RNVTNSVAFTTESCHSHLIVLLNVVEATITRHECCHFLAVLNELYT 242
SDS + V+ V S +SHL LN+ H CC + L++
Sbjct: 599 SDSWKEVSEEVVVYQHSAYSHLSYSLNIHHCFSNSHFCCQGRLAFDALFS 648
>06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -2
Query: 242 EHTYEWLNSAAWLQQPTFSRTMPLA*DAPPKG 147
E T+ W A LQQPT T PL P G
Sbjct: 2346 EDTFTWFACATTLQQPTRPFTSPLYKHMPTGG 2377
>03_03_0060 - 14157352-14158851
Length = 499
Score = 27.1 bits (57), Expect = 6.5
Identities = 26/119 (21%), Positives = 50/119 (42%)
Frame = +3
Query: 45 GYSHGAQARESSSRAAMGRQGIQKSPHGYEMEGEPLRWCISC*GHRPRKSWLLKPSSRIQ 224
G +G SSR A + ++++ H ++ E C G P + +L+ +R+
Sbjct: 26 GPDNGGLPPRRSSRIAERKNVVKRARHRHDGEQPATSRCSQLSGEMPDEM-VLELLARL- 83
Query: 225 PFVSVFVYSSLRTARK*QHSCRVMVASTTLRRTMRCEWQDSVVKATLLVTFLESDLRWL 401
P S+ ++ + VA+ R R W+ +++ A L+ E D+ WL
Sbjct: 84 PVKSLLRLRAVSRPWRAAICAPSFVAAHLRRSAARHRWEPTLLIAPQLLDDAERDIIWL 142
>12_02_0675 + 21814048-21814368
Length = 106
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 95 GPTRNSKKPTWVRDGRRTPSVVHLMLRASSSKKLA 199
GP R +KPT VR + P + RA + +LA
Sbjct: 48 GPYRRPRKPTEVRSQAKCPGDLRAQSRALKATELA 82
>12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311
Length = 901
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -3
Query: 400 NHLKSDSRNVTNSVAFTTESCHSHLIVLLNVVEATITRHECCHFLAVLNELY 245
+H+K V NS+ F I+LL+ + I C +L+V E Y
Sbjct: 376 SHMKEQWEQVHNSIGFVFSQQGIRDILLLSYYDLPINLKTCLLYLSVFPEDY 427
>06_01_0267 -
1972988-1973148,1973275-1973403,1973881-1974024,
1974368-1974493,1974595-1974720,1975149-1975241,
1975465-1975606,1976747-1976878,1976943-1977080,
1977431-1977523,1978186-1978389,1978568-1978656,
1978839-1978988,1979088-1979253,1979355-1979576,
1979687-1979872,1980289-1980411,1980511-1980611,
1982005-1982155
Length = 891
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 385 DSRNVTNSVAFTTESCHSHLIVLLNVVEATITRHE 281
++ V + TES SH ++++NV A +HE
Sbjct: 239 EAHRVAANTKLNTESSRSHALLMVNVRRAVKGKHE 273
>04_02_0034 -
8999618-9000358,9001439-9001618,9001666-9003621,
9004647-9004786,9004871-9005282,9006399-9006638
Length = 1222
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 82 REQRWADKEFKKAHMGTRWKANPFGG 159
R +RW DK+ K R KA+PF G
Sbjct: 245 RTKRWHDKQIKIKKFKPRDKASPFCG 270
>03_06_0741 +
35893538-35895600,35896274-35896474,35896701-35896814,
35897570-35897649,35897772-35897896,35898008-35898079
Length = 884
Score = 26.6 bits (56), Expect = 8.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 98 PTRNSKKPTWVRDGRRTPSVVHL 166
PT+++ +PTWV + P+V+ L
Sbjct: 65 PTQHAPEPTWVNPSKPKPTVLSL 87
>02_01_0125 +
920128-920392,920491-921839,921921-922084,922340-922370,
922534-922565,922730-923060,923210-923713
Length = 891
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 137 HLVPMWAFLNSLSAHRCSRR*FTCLRAVRI 48
H+V WAFL + C F C+ V++
Sbjct: 577 HIVNSWAFLQPFTLQMCQVLQFACVNEVQL 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,287,089
Number of Sequences: 37544
Number of extensions: 296073
Number of successful extensions: 945
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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