Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_C20
(432 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 153 2e-37
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 153 2e-37
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 153 2e-37
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 97 2e-20
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 42 7e-04
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 42 7e-04
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 42 7e-04
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 42 7e-04
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 42 7e-04
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 42 7e-04
AK091044-1|BAC03573.1| 264|Homo sapiens protein ( Homo sapiens ... 34 0.24
AB067495-1|BAB67801.1| 445|Homo sapiens KIAA1908 protein protein. 34 0.24
AY307930-1|AAQ73824.1| 340|Homo sapiens intestinal mucin MUC3A ... 31 1.3
X72012-1|CAA50891.1| 625|Homo sapiens endoglin protein. 30 3.9
DQ866809-1|ABI75346.1| 625|Homo sapiens endoglin (Osler-Rendu-W... 30 3.9
AL162586-6|CAI39765.1| 625|Homo sapiens endoglin (Osler-Rendu-W... 30 3.9
AL157935-2|CAI12605.1| 625|Homo sapiens endoglin (Osler-Rendu-W... 30 3.9
AK092212-1|BAC03830.1| 186|Homo sapiens protein ( Homo sapiens ... 30 3.9
BC016330-1|AAH16330.1| 352|Homo sapiens RAD51AP1 protein protein. 29 5.1
BC006992-1|AAH06992.1| 335|Homo sapiens RAD51 associated protei... 29 5.1
AK096930-1|BAC04902.1| 352|Homo sapiens protein ( Homo sapiens ... 29 5.1
AF006259-1|AAC39554.1| 335|Homo sapiens Rad51-interacting prote... 29 5.1
AY312160-1|AAQ82434.1| 1569|Homo sapiens mucin glycoprotein prot... 29 6.8
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 153 bits (371), Expect = 2e-37
Identities = 73/81 (90%), Positives = 77/81 (95%)
Frame = +2
Query: 188 KKLAVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAV 367
+K+ VEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEV VAGFGRKGHAV
Sbjct: 53 EKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAV 112
Query: 368 GDIPGVRFEVVKVANVSLLAL 430
GDIPGVRF+VVKVANVSLLAL
Sbjct: 113 GDIPGVRFKVVKVANVSLLAL 133
Score = 97.5 bits (232), Expect = 2e-20
Identities = 43/56 (76%), Positives = 50/56 (89%)
Frame = +1
Query: 31 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVG 198
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVG
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVG 56
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 153 bits (371), Expect = 2e-37
Identities = 73/81 (90%), Positives = 77/81 (95%)
Frame = +2
Query: 188 KKLAVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAV 367
+K+ VEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEV VAGFGRKGHAV
Sbjct: 53 EKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAV 112
Query: 368 GDIPGVRFEVVKVANVSLLAL 430
GDIPGVRF+VVKVANVSLLAL
Sbjct: 113 GDIPGVRFKVVKVANVSLLAL 133
Score = 97.5 bits (232), Expect = 2e-20
Identities = 43/56 (76%), Positives = 50/56 (89%)
Frame = +1
Query: 31 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVG 198
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVG
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVG 56
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 153 bits (371), Expect = 2e-37
Identities = 73/81 (90%), Positives = 77/81 (95%)
Frame = +2
Query: 188 KKLAVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAV 367
+K+ VEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEV VAGFGRKGHAV
Sbjct: 53 EKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAV 112
Query: 368 GDIPGVRFEVVKVANVSLLAL 430
GDIPGVRF+VVKVANVSLLAL
Sbjct: 113 GDIPGVRFKVVKVANVSLLAL 133
Score = 97.5 bits (232), Expect = 2e-20
Identities = 43/56 (76%), Positives = 50/56 (89%)
Frame = +1
Query: 31 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVG 198
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVG
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVG 56
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 97.5 bits (232), Expect = 2e-20
Identities = 46/50 (92%), Positives = 47/50 (94%)
Frame = +2
Query: 281 FVPRDGCLNHIEENDEV*VAGFGRKGHAVGDIPGVRFEVVKVANVSLLAL 430
FVP DGCLN IEENDEV VAGFGRKGHAVGDIPGVRF+VVKVANVSLLAL
Sbjct: 1 FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 50
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 42.3 bits (95), Expect = 7e-04
Identities = 27/65 (41%), Positives = 40/65 (61%)
Frame = +2
Query: 209 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAVGDIPGVR 388
K+PNSA RKC RV+L G++ F+P +G + ++E+ V V G GR D+PGV+
Sbjct: 71 KKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG-GR----TQDLPGVK 122
Query: 389 FEVVK 403
VV+
Sbjct: 123 LTVVR 127
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 42.3 bits (95), Expect = 7e-04
Identities = 27/65 (41%), Positives = 40/65 (61%)
Frame = +2
Query: 209 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAVGDIPGVR 388
K+PNSA RKC RV+L G++ F+P +G + ++E+ V V G GR D+PGV+
Sbjct: 71 KKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG-GR----TQDLPGVK 122
Query: 389 FEVVK 403
VV+
Sbjct: 123 LTVVR 127
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 42.3 bits (95), Expect = 7e-04
Identities = 27/65 (41%), Positives = 40/65 (61%)
Frame = +2
Query: 209 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAVGDIPGVR 388
K+PNSA RKC RV+L G++ F+P +G + ++E+ V V G GR D+PGV+
Sbjct: 71 KKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG-GR----TQDLPGVK 122
Query: 389 FEVVK 403
VV+
Sbjct: 123 LTVVR 127
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 42.3 bits (95), Expect = 7e-04
Identities = 27/65 (41%), Positives = 40/65 (61%)
Frame = +2
Query: 209 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAVGDIPGVR 388
K+PNSA RKC RV+L G++ F+P +G + ++E+ V V G GR D+PGV+
Sbjct: 71 KKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG-GR----TQDLPGVK 122
Query: 389 FEVVK 403
VV+
Sbjct: 123 LTVVR 127
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 42.3 bits (95), Expect = 7e-04
Identities = 27/65 (41%), Positives = 40/65 (61%)
Frame = +2
Query: 209 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAVGDIPGVR 388
K+PNSA RKC RV+L G++ F+P +G + ++E+ V V G GR D+PGV+
Sbjct: 71 KKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG-GR----TQDLPGVK 122
Query: 389 FEVVK 403
VV+
Sbjct: 123 LTVVR 127
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 42.3 bits (95), Expect = 7e-04
Identities = 27/65 (41%), Positives = 40/65 (61%)
Frame = +2
Query: 209 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAVGDIPGVR 388
K+PNSA RKC RV+L G++ F+P +G + ++E+ V V G GR D+PGV+
Sbjct: 71 KKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG-GR----TQDLPGVK 122
Query: 389 FEVVK 403
VV+
Sbjct: 123 LTVVR 127
>AK091044-1|BAC03573.1| 264|Homo sapiens protein ( Homo sapiens
cDNA FLJ33725 fis, clone BRAWH2017379. ).
Length = 264
Score = 33.9 bits (74), Expect = 0.24
Identities = 25/74 (33%), Positives = 32/74 (43%)
Frame = +3
Query: 6 RRSCSRYRNG*TSGYSHGAQARESSSRAAMGRQGIQKSPHGYEMEGEPLRWCISC*GHRP 185
RR C + +SG + AQA + SR GR G + P E S P
Sbjct: 68 RRGCG---DSGSSGMAQRAQAGSNQSRGKCGRDG-RCPPRSSPGAPEAAERVESAETRGP 123
Query: 186 RKSWLLKPSSRIQP 227
KSW+L PSS +P
Sbjct: 124 GKSWILSPSSMSEP 137
>AB067495-1|BAB67801.1| 445|Homo sapiens KIAA1908 protein protein.
Length = 445
Score = 33.9 bits (74), Expect = 0.24
Identities = 25/74 (33%), Positives = 32/74 (43%)
Frame = +3
Query: 6 RRSCSRYRNG*TSGYSHGAQARESSSRAAMGRQGIQKSPHGYEMEGEPLRWCISC*GHRP 185
RR C + +SG + AQA + SR GR G + P E S P
Sbjct: 158 RRGCG---DSGSSGMAQRAQAGSNQSRGKCGRDG-RCPPRSSPGAPEAAERVESAETRGP 213
Query: 186 RKSWLLKPSSRIQP 227
KSW+L PSS +P
Sbjct: 214 GKSWILSPSSMSEP 227
>AY307930-1|AAQ73824.1| 340|Homo sapiens intestinal mucin MUC3A
precursor protein.
Length = 340
Score = 31.5 bits (68), Expect = 1.3
Identities = 25/94 (26%), Positives = 41/94 (43%)
Frame = -1
Query: 414 TFATLTTSNLTPGMSPTAWPLRPNPATHTSSFSSMWLRQPSRGTNAVTFLPFLMSCTRTH 235
T +TT+ + S T+ P+ P T +S SM + +GT+A+T P + T
Sbjct: 142 TSICVTTTQVAFTSSYTSTPVTQKPVTTVTSTYSMTTTE--KGTSAMTSSPSTTTARETP 199
Query: 234 LRMAEFGCLASTANFFEDDALSMRCTTEGVRLPS 133
+ +++T F S TTE LP+
Sbjct: 200 IVTVTPSSVSATDTTFHTTISSTTRTTERTPLPT 233
>X72012-1|CAA50891.1| 625|Homo sapiens endoglin protein.
Length = 625
Score = 29.9 bits (64), Expect = 3.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 162 CTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPR 40
CT++G+ LP+ + F FL+G L A + ++ + PR
Sbjct: 582 CTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTREYPR 622
>DQ866809-1|ABI75346.1| 625|Homo sapiens endoglin
(Osler-Rendu-Weber syndrome 1) protein.
Length = 625
Score = 29.9 bits (64), Expect = 3.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 162 CTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPR 40
CT++G+ LP+ + F FL+G L A + ++ + PR
Sbjct: 582 CTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTREYPR 622
>AL162586-6|CAI39765.1| 625|Homo sapiens endoglin
(Osler-Rendu-Weber syndrome 1) protein.
Length = 625
Score = 29.9 bits (64), Expect = 3.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 162 CTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPR 40
CT++G+ LP+ + F FL+G L A + ++ + PR
Sbjct: 582 CTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTREYPR 622
>AL157935-2|CAI12605.1| 625|Homo sapiens endoglin
(Osler-Rendu-Weber syndrome 1) protein.
Length = 625
Score = 29.9 bits (64), Expect = 3.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 162 CTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPR 40
CT++G+ LP+ + F FL+G L A + ++ + PR
Sbjct: 582 CTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTREYPR 622
>AK092212-1|BAC03830.1| 186|Homo sapiens protein ( Homo sapiens
cDNA FLJ34893 fis, clone NT2NE2017721. ).
Length = 186
Score = 29.9 bits (64), Expect = 3.9
Identities = 20/56 (35%), Positives = 24/56 (42%)
Frame = +3
Query: 60 AQARESSSRAAMGRQGIQKSPHGYEMEGEPLRWCISC*GHRPRKSWLLKPSSRIQP 227
AQA + SR GR G + P E S P KSW+L PSS +P
Sbjct: 5 AQAGSNQSRGKCGRDG-RCPPRSSPGAPEAAERVESAETRGPGKSWILSPSSMSEP 59
>BC016330-1|AAH16330.1| 352|Homo sapiens RAD51AP1 protein protein.
Length = 352
Score = 29.5 bits (63), Expect = 5.1
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 98 PTRNSKKPTWVRDGRRTPSVVHLMLRASSSKKLAVEAKQPNSAIR 232
P+ SKKP WV P R+SSS + V K PN ++R
Sbjct: 295 PSAESKKPKWV------PPAASGGSRSSSSPLVVVSVKSPNQSLR 333
>BC006992-1|AAH06992.1| 335|Homo sapiens RAD51 associated protein 1
protein.
Length = 335
Score = 29.5 bits (63), Expect = 5.1
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 98 PTRNSKKPTWVRDGRRTPSVVHLMLRASSSKKLAVEAKQPNSAIR 232
P+ SKKP WV P R+SSS + V K PN ++R
Sbjct: 278 PSAESKKPKWV------PPAASGGSRSSSSPLVVVSVKSPNQSLR 316
>AK096930-1|BAC04902.1| 352|Homo sapiens protein ( Homo sapiens
cDNA FLJ39611 fis, clone SKNSH2008940, highly similar to
Homo sapiens Rad51-interacting protein mRNA. ).
Length = 352
Score = 29.5 bits (63), Expect = 5.1
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 98 PTRNSKKPTWVRDGRRTPSVVHLMLRASSSKKLAVEAKQPNSAIR 232
P+ SKKP WV P R+SSS + V K PN ++R
Sbjct: 295 PSAESKKPKWV------PPAASGGSRSSSSPLVVVSVKSPNQSLR 333
>AF006259-1|AAC39554.1| 335|Homo sapiens Rad51-interacting protein
protein.
Length = 335
Score = 29.5 bits (63), Expect = 5.1
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 98 PTRNSKKPTWVRDGRRTPSVVHLMLRASSSKKLAVEAKQPNSAIR 232
P+ SKKP WV P R+SSS + V K PN ++R
Sbjct: 278 PSAESKKPKWV------PPAASGGSRSSSSPLVVVSVKSPNQSLR 316
>AY312160-1|AAQ82434.1| 1569|Homo sapiens mucin glycoprotein protein.
Length = 1569
Score = 29.1 bits (62), Expect = 6.8
Identities = 21/42 (50%), Positives = 24/42 (57%)
Frame = -1
Query: 396 TSNLTPGMSPTAWPLRPNPATHTSSFSSMWLRQPSRGTNAVT 271
+SN TP SPT PL P AT TSS + +P R T AVT
Sbjct: 1240 SSNHTPA-SPTQTPLLP--ATLTSSKPTASSGEPPRPTTAVT 1278
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,518,946
Number of Sequences: 237096
Number of extensions: 1618377
Number of successful extensions: 8263
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 7980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8242
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3430805640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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