Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_C20
         (432 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   147   3e-36
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    34   0.038
U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase pro...    28   2.5  
AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kin...    28   2.5  
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  147 bits (356), Expect = 3e-36
 Identities = 67/81 (82%), Positives = 75/81 (92%)
 Frame = +2

Query: 188 KKLAVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAV 367
           +K+ VEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN +EENDEV V+GFGR GHAV
Sbjct: 53  EKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAV 112

Query: 368 GDIPGVRFEVVKVANVSLLAL 430
           GDIPGVRF++VKVAN SL+AL
Sbjct: 113 GDIPGVRFKIVKVANTSLIAL 133



 Score =  102 bits (245), Expect = 1e-22
 Identities = 43/56 (76%), Positives = 50/56 (89%)
 Frame = +1

Query: 31  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVG 198
           MGKP+G+ TARK   HR+EQRW DK +KKAH+GTRWK+NPFGGASHAKGIVLEK+G
Sbjct: 1   MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIG 56


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 34.3 bits (75), Expect = 0.038
 Identities = 20/49 (40%), Positives = 32/49 (65%)
 Frame = +2

Query: 209 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRK 355
           K+PNS  RKC  V+L   G +V A++P  G  ++++E+ +V V G GR+
Sbjct: 89  KKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLVKG-GRR 133


>U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase
           protein 3 protein.
          Length = 615

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 418 RHVCYLNHLKSDSRNVTNSVAFTTESCHSHLIVLLNVVEATITRHE 281
           R++   +H   DS+NV     FT E C  + ++ LN     +T HE
Sbjct: 93  RNIVQFHHFFEDSQNVY----FTLELCSKNSLMELNKQRGPLTEHE 134


>AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kinase
           protein.
          Length = 615

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 418 RHVCYLNHLKSDSRNVTNSVAFTTESCHSHLIVLLNVVEATITRHE 281
           R++   +H   DS+NV     FT E C  + ++ LN     +T HE
Sbjct: 93  RNIVQFHHFFEDSQNVY----FTLELCSKNSLMELNKQRGPLTEHE 134


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 275 TAFVPRDGCLNHIEEN 322
           T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668


>AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical
           protein C49A9.6 protein.
          Length = 360

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +1

Query: 28  VMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFG 156
           V  K   +  + KH  H  +  + D  FKK   GTRW    +G
Sbjct: 235 VDSKTESLFVSNKH--HLEQGHFFDGNFKKNADGTRWTCQNYG 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,791,135
Number of Sequences: 27780
Number of extensions: 234098
Number of successful extensions: 709
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)