Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_C20
         (432 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   3.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   4.5  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   5.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   5.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   5.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   5.9  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   7.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 356 GHAVGDIPGVR 388
           GH V D+PGVR
Sbjct: 69  GHPVNDVPGVR 79



 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -1

Query: 420  SDTFATLTTSNLTPGMSPTAWPLRPNPAT 334
            S    ++ T    PG+ P A  L PN  T
Sbjct: 1486 SSPVLSVRTQGQAPGIPPAATFLSPNSTT 1514



 Score = 20.6 bits (41), Expect = 7.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 122 TWVRDGRRTP 151
           TW +DGR+ P
Sbjct: 366 TWYKDGRQLP 375


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 356 GHAVGDIPGVR 388
           GH V D+PGVR
Sbjct: 69  GHPVNDVPGVR 79



 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -1

Query: 420  SDTFATLTTSNLTPGMSPTAWPLRPNPAT 334
            S    ++ T    PG+ P A  L PN  T
Sbjct: 1482 SSPVLSVRTQGQAPGIPPAATFLSPNSTT 1510



 Score = 20.6 bits (41), Expect = 7.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 122 TWVRDGRRTP 151
           TW +DGR+ P
Sbjct: 366 TWYKDGRQLP 375


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 356 GHAVGDIPGVR 388
           G AVGD+PG+R
Sbjct: 42  GSAVGDVPGLR 52


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 183 PRKSWLLKPSSRIQPFVSVFVYSSLRTA 266
           P  +WL   +S I PF+  F  +  R A
Sbjct: 342 PALTWLGWINSAINPFIYAFYSADFRLA 369


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +2

Query: 215 PNSAIRKCV 241
           PNSA+RKC+
Sbjct: 584 PNSAVRKCM 592


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 405 TLTTSNLTPGMSPTAWP 355
           T+  SN+TP     AWP
Sbjct: 905 TVARSNVTPRSPGRAWP 921


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +3

Query: 60  AQARESSSRAAMGRQGIQKSPHGYEMEGEPLRWCISC*GH 179
           A + E+S+ A    + + K P  + +     RW  SC G+
Sbjct: 34  ATSHEASAPAEGKFKTVSKVPGPFSLPIFGTRWIFSCIGY 73


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 10/16 (62%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
 Frame = -3

Query: 73  SRACAPCEYPEV--YP 32
           S  CA CE PEV  YP
Sbjct: 216 SNMCALCEKPEVCDYP 231


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 10/16 (62%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
 Frame = -3

Query: 73  SRACAPCEYPEV--YP 32
           S  CA CE PEV  YP
Sbjct: 216 SNMCALCEKPEVCDYP 231


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 10/16 (62%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
 Frame = -3

Query: 73  SRACAPCEYPEV--YP 32
           S  CA CE PEV  YP
Sbjct: 216 SNMCALCEKPEVCDYP 231


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 391 KSDSRNVTNSVAFTTESCHSHLIV 320
           KS  RN+ ++ A  TES  ++++V
Sbjct: 267 KSGKRNIIDNSAQKTESKTNNIVV 290


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 382  SRNVTNSVAFTTESCHSHLI 323
            S+NV   V F T   H H I
Sbjct: 973  SKNVQGRVGFVTPFEHRHFI 992


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,022
Number of Sequences: 438
Number of extensions: 2400
Number of successful extensions: 22
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)