Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_C19
         (171 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    36   5e-04
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    36   0.001
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    36   0.001
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    33   0.007
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    26   0.58 
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    25   1.8  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    24   3.1  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    23   4.1  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    23   5.4  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    23   5.4  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    23   7.1  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    23   7.1  
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    23   7.1  

>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 36.3 bits (80), Expect = 5e-04
 Identities = 18/52 (34%), Positives = 31/52 (59%)
 Frame = +3

Query: 3   TRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 158
           +RKK+  T  PKR MSA+M +    RE++K+++P     ++    G+ WK +
Sbjct: 8   SRKKDPNT--PKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKEL 57


>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 35.5 bits (78), Expect = 0.001
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = +3

Query: 6   RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 155
           RK    T++  RP +A++L+       +   +P +  ++++K  GEMW++
Sbjct: 94  RKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 35.5 bits (78), Expect = 0.001
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = +3

Query: 6   RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 155
           RK    T++  RP +A++L+       +   +P +  ++++K  GEMW++
Sbjct: 94  RKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 32.7 bits (71), Expect = 0.007
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
 Frame = +3

Query: 3   TRKKNKMTD--KPKRPMSAYMLWLNSAREQIKSEHPGLK---VTEIAKKGGEMWKSMKD 164
           T  K K  D  +PKRP SAY L+  + R +IK E  G K   V E+ K   E W S+ +
Sbjct: 105 TPNKRKARDPAQPKRPPSAYNLFQKNQRSEIK-ESLGEKSNDVKEVNKAMHEKWGSLSE 162


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +3

Query: 24  TDKPKRPMSA--YMLWLNSAREQIKSEHPGLKVTEIAKKGGEMW 149
           TDKP +  S     + L+   E  +S+HP + V  +   G E W
Sbjct: 119 TDKPSQSPSGNEVQVGLDMYNEGYRSDHPVIMVPGVISSGLESW 162


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 27  DKPKRPMSAYMLWLNSAREQIKSE 98
           D PK+  +AY+L LN + E  KSE
Sbjct: 218 DMPKQVKNAYILILNVSLEYEKSE 241


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/51 (23%), Positives = 27/51 (52%)
 Frame = +3

Query: 3   TRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 155
           T ++       KRP++++ML+    R   ++E P      I++  G++W++
Sbjct: 6   TAEQKDQKSSVKRPLNSFMLY----RRDRQAEIPTSNHQSISRIIGQLWRN 52


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 134  FFGYFSDFQPRMFRLDLFSGTVEPQH 57
            +F   S  QP     + FSGTV P +
Sbjct: 1275 YFAKLSKKQPEWVSFNSFSGTVRPSN 1300


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 45  MSAYMLWLNSAREQIKSEHPGLK 113
           +  Y  +LN+AR QIK  H   K
Sbjct: 627 LQIYGSYLNNARSQIKPSHSDSK 649


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 119 SDFQPRMFRLDLFSGTVEPQH 57
           ++F+P+ +R+D   GT  P +
Sbjct: 252 TEFKPQSYRVDSLLGTARPYY 272


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 44  YVSLYAVAQQCQRTDQV*TSWAES 115
           Y SL+   Q C   +Q+   W ES
Sbjct: 60  YQSLFEEFQDCFENEQLDVEWVES 83


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = -3

Query: 151 FHISPPFLAISVTFSPGCSDLICSLALLSHSI*ADIG 41
           F   PP +A+  TF P  + +  +  +   ++   IG
Sbjct: 465 FLFLPPLIAMQATFPPAMTSMATATLMFIRTMGGSIG 501


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 4   RGKKIK*RTSRSGLCQPICCG 66
           +GK++K R +R+ LC P C G
Sbjct: 133 KGKEVKLRATRNTLC-PRCQG 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 716,919
Number of Sequences: 5004
Number of extensions: 10512
Number of successful extensions: 33
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 37
effective length of database: 2,177,330
effective search space used: 41369270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)