Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_C19
         (171 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560...    53   4e-08
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662...    52   5e-08
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449...    50   4e-07
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443...    48   1e-06
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490...    47   2e-06
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217           42   5e-05
04_04_0814 + 28266590-28266615,28266780-28266860,28266986-282670...    42   7e-05
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312...    38   0.002
02_04_0578 + 24020404-24021178,24021320-24021463,24022096-24022355     27   2.8  
01_01_0397 + 3034059-3034691                                           27   2.8  
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508...    26   5.0  
01_07_0053 + 40772966-40773080,40773484-40773578,40773730-407738...    26   5.0  
01_06_1673 + 39059483-39059611,39059851-39060032,39060247-390604...    25   6.6  
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358...    25   8.7  

>09_06_0203 +
           21555747-21555805,21555862-21555939,21556034-21556091,
           21556191-21556235,21556514-21556549,21556855-21556935,
           21557016-21557087,21557184-21557195
          Length = 146

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = +3

Query: 9   KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMKD 164
           K  K  +KPKRP SA+ +++   R+  K +HP +K V+ I K GG+ WKSM D
Sbjct: 27  KAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWKSMTD 79


>08_01_0008 -
           65366-65497,65588-65759,65846-65972,66058-66140,
           66232-66329
          Length = 203

 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 23/47 (48%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
 Frame = +3

Query: 30  KPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMKDK 167
           K KRP +A+ L+++  R++ K+EHP  K V+ +AK+GGE WKSM D+
Sbjct: 91  KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDE 137


>01_01_0605 +
           4497308-4497472,4497719-4497904,4498898-4499003,
           4499062-4499216,4499341-4499424,4499498-4499589,
           4499729-4499837,4499944-4500030,4500153-4500245,
           4501144-4501341,4501481-4501632,4501724-4501874,
           4501975-4502073,4502159-4502326,4502624-4502702,
           4502870-4503000
          Length = 684

 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 23/50 (46%), Positives = 32/50 (64%)
 Frame = +3

Query: 9   KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 158
           KK K  + PKR M+ +M +  + R  +K+ +P L  TEIAKK GEMW+ M
Sbjct: 591 KKKKDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKM 640


>02_05_0261 +
           27243898-27243938,27244068-27244157,27244293-27244350,
           27244441-27244485,27244778-27244855,27244940-27245041,
           27245150-27245173
          Length = 145

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
 Frame = +3

Query: 6   RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMKDK 167
           RKK   + KPKRP SA+ ++++  R++ ++ HP  K V  ++K  GE W++M ++
Sbjct: 24  RKKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQ 78


>05_01_0562 +
           4907937-4907990,4908890-4909075,4909180-4909285,
           4909377-4909513,4909989-4910072,4910157-4910248,
           4910358-4910466,4910554-4910640,4910737-4910829,
           4911384-4911581,4911659-4911810,4911910-4912060,
           4912174-4912272,4912362-4912535,4912680-4912758,
           4912858-4912979
          Length = 640

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 21/50 (42%), Positives = 31/50 (62%)
 Frame = +3

Query: 9   KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 158
           KK K  + PKR ++ +M +  + R  +K+ +P L  TEIAKK GE W+ M
Sbjct: 550 KKKKDPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKM 599


>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
          Length = 504

 Score = 42.3 bits (95), Expect = 5e-05
 Identities = 21/53 (39%), Positives = 30/53 (56%)
 Frame = +3

Query: 6   RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 164
           +KK K   KPK+PMSAY ++    R  + +E     V EI +  GE WK+M +
Sbjct: 276 KKKEKDPSKPKQPMSAYFVYTQQRRAALVAEKK--NVPEIGRITGEEWKAMSE 326



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 12  KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 158
           K K   + K+P  AY+LW      +IK E P     E++   G  WK++
Sbjct: 150 KGKAGHERKKPCPAYVLWCKDQWNEIKKESPDADFKEVSNALGAKWKAL 198



 Score = 35.5 bits (78), Expect = 0.006
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 27  DKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 158
           ++PK+P S+++L+   AR Q+  E PG+  + +       WK +
Sbjct: 412 NRPKKPASSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKEL 455


>04_04_0814 +
           28266590-28266615,28266780-28266860,28266986-28267043,
           28267143-28267187,28268653-28268721,28268821-28268931,
           28269038-28269046
          Length = 132

 Score = 41.9 bits (94), Expect = 7e-05
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 6   RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMKDK 167
           RKK     KPKR ++ +  +L   R Q   +HP  K V  + K  GE W++M D+
Sbjct: 16  RKKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSDE 70


>01_06_0175 +
           27229878-27230056,27231102-27231159,27231230-27231274,
           27232711-27232791,27232884-27232922
          Length = 133

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
 Frame = +3

Query: 3   TRKKNK-MTDK--PKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSM 158
           +RKK + + D+  PK+P +A+  ++   R+  K E+P +K + E+ K  GE W +M
Sbjct: 36  SRKKGQPLVDRRRPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTM 91


>02_04_0578 + 24020404-24021178,24021320-24021463,24022096-24022355
          Length = 392

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 33  PKRPMSAYMLWLNSAREQIKSEHPGLK 113
           P R   + +LWL    E + S HPG +
Sbjct: 198 PSRRCVSLLLWLEERYETVYSRHPGFQ 224


>01_01_0397 + 3034059-3034691
          Length = 210

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 30  KPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKG 137
           K  R + A ++ + ++R+ IKS   G+K  + AK+G
Sbjct: 26  KLARTVPAILMRIGTSRKAIKSTMKGMKAMKAAKRG 61


>03_05_0176 +
           21546952-21547887,21548856-21548921,21549959-21550877,
           21551277-21551449,21551927-21552475
          Length = 880

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 6   RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPG 107
           +KKNK T + KR  +A ++  +   +Q K  H G
Sbjct: 804 KKKNKRTQRRKRKQNAQVMKQHQFEKQRKLYHAG 837


>01_07_0053 +
           40772966-40773080,40773484-40773578,40773730-40773843,
           40773984-40774088,40774179-40774250,40774293-40774346,
           40774507-40774619,40774705-40774839,40774941-40775009,
           40775140-40775227,40775327-40775398,40775476-40775576,
           40775836-40775953,40776054-40776113,40776206-40776316,
           40776499-40776573,40776821-40776854,40777453-40777805,
           40778154-40778222,40778526-40778762
          Length = 729

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = +3

Query: 27  DKPKRPMS----AYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 167
           DKP +P +     YM+   SAR+++ +++  + + +  +K GE+W    D+
Sbjct: 672 DKPDKPHNFEPEIYMME-RSARDKLIADYNTMDIWDFNEKYGELWDFTVDR 721


>01_06_1673 +
           39059483-39059611,39059851-39060032,39060247-39060445,
           39060532-39060693,39060920-39061222,39061343-39061603
          Length = 411

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 158 H*FPHFTSFFGYF 120
           H FPH T FFG+F
Sbjct: 99  HIFPHRTGFFGWF 111


>06_01_0501 -
           3587390-3587528,3587922-3588031,3588122-3588187,
           3588293-3588410,3588499-3588554,3588647-3588766,
           3588937-3589035,3589443-3589490,3589534-3589545,
           3590353-3590418,3591412-3591471,3592061-3592162,
           3592405-3592426,3592959-3593041,3593166-3593293,
           3593775-3593881,3594376-3594845
          Length = 601

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 54  YMLWLNSAREQIKSEHPGL 110
           ++LW+++ R    S HPGL
Sbjct: 239 FILWMSTIRTMCLSNHPGL 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,618,821
Number of Sequences: 37544
Number of extensions: 66342
Number of successful extensions: 214
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 14,793,348
effective HSP length: 36
effective length of database: 13,441,764
effective search space used: 268835280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)