Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_C19
(171 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 50 2e-07
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 49 5e-07
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 49 5e-07
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 47 2e-06
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 46 5e-06
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 44 2e-05
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 43 3e-05
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 42 6e-05
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 42 6e-05
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 42 6e-05
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 42 6e-05
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 41 1e-04
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 41 1e-04
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 41 1e-04
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 41 1e-04
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 41 1e-04
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 33 0.036
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 32 0.063
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 32 0.063
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 32 0.063
Z68006-1|CAA91998.1| 251|Caenorhabditis elegans Hypothetical pr... 31 0.14
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 31 0.14
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 31 0.14
Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical pr... 31 0.14
Z82060-6|CAB04887.1| 301|Caenorhabditis elegans Hypothetical pr... 26 3.1
AF067217-5|AAO38635.1| 856|Caenorhabditis elegans Hypothetical ... 26 4.1
AF067217-4|AAF99978.1| 887|Caenorhabditis elegans Hypothetical ... 26 4.1
AF000265-2|AAO38667.1| 887|Caenorhabditis elegans Paz/piwi doma... 26 4.1
AF000265-1|AAB52946.2| 913|Caenorhabditis elegans Paz/piwi doma... 26 4.1
AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior pha... 25 5.4
Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z81573-3|CAB04624.3| 398|Caenorhabditis elegans Hypothetical pr... 25 7.2
AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine... 25 7.2
U51998-8|AAA96081.2| 241|Caenorhabditis elegans Hypothetical pr... 25 9.5
AC006618-3|AAK68251.3| 960|Caenorhabditis elegans Patched relat... 25 9.5
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 50.4 bits (115), Expect = 2e-07
Identities = 23/50 (46%), Positives = 33/50 (66%)
Frame = +3
Query: 9 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 158
KK+K + PKR SAYM W ++R ++K + G V ++AKKGG WK+M
Sbjct: 548 KKDKDPNAPKRATSAYMQWFLASRNELKED--GDSVADVAKKGGAKWKTM 595
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 48.8 bits (111), Expect = 5e-07
Identities = 23/53 (43%), Positives = 31/53 (58%)
Frame = +3
Query: 12 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDKS 170
K K + PKR MSA+ W+ RE+IK PG+ V ++AK G W + DKS
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGVADVAKAAGVEWGKLTDKS 71
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 48.8 bits (111), Expect = 5e-07
Identities = 23/53 (43%), Positives = 31/53 (58%)
Frame = +3
Query: 12 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDKS 170
K K + PKR MSA+ W+ RE+IK PG+ V ++AK G W + DKS
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGVADVAKAAGVEWGKLTDKS 71
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 47.2 bits (107), Expect = 2e-06
Identities = 21/50 (42%), Positives = 32/50 (64%)
Frame = +3
Query: 9 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 158
KK K ++PKR +AY++W N+ R +K + G + ++AKK G WKSM
Sbjct: 553 KKTKDPNEPKRATTAYIIWFNANRNSMKED--GDTLGDVAKKAGAKWKSM 600
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 45.6 bits (103), Expect = 5e-06
Identities = 18/50 (36%), Positives = 33/50 (66%)
Frame = +3
Query: 18 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 167
K D+ KRPM+A+M+W R+++ E+P + +EI+K+ G WK + ++
Sbjct: 55 KNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQ 104
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 43.6 bits (98), Expect = 2e-05
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +3
Query: 18 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 167
K ++ KRPM+A+M+W R +I P + EI+K+ G W+S+ D+
Sbjct: 88 KSSNHIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDE 137
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 43.2 bits (97), Expect = 3e-05
Identities = 16/47 (34%), Positives = 30/47 (63%)
Frame = +3
Query: 27 DKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 167
D KRPM+A+M+W R ++ ++P + +EI+K+ G WK + ++
Sbjct: 46 DHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQ 92
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 41.9 bits (94), Expect = 6e-05
Identities = 17/49 (34%), Positives = 30/49 (61%)
Frame = +3
Query: 6 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK 152
++ K PKR +SA+ + R +I++ HP KV ++A++ G+MWK
Sbjct: 125 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWK 173
Score = 32.3 bits (70), Expect = 0.047
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 48 SAYMLWLNSAREQIKSEHPG--LKVTEIAKKGGEMWKSMKD 164
S Y ++ E+ K ++P ++VTEI+KK E WK+M D
Sbjct: 49 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 89
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 41.9 bits (94), Expect = 6e-05
Identities = 17/49 (34%), Positives = 30/49 (61%)
Frame = +3
Query: 6 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK 152
++ K PKR +SA+ + R +I++ HP KV ++A++ G+MWK
Sbjct: 124 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWK 172
Score = 32.3 bits (70), Expect = 0.047
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 48 SAYMLWLNSAREQIKSEHPG--LKVTEIAKKGGEMWKSMKD 164
S Y ++ E+ K ++P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 41.9 bits (94), Expect = 6e-05
Identities = 17/49 (34%), Positives = 30/49 (61%)
Frame = +3
Query: 6 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK 152
++ K PKR +SA+ + R +I++ HP KV ++A++ G+MWK
Sbjct: 126 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWK 174
Score = 32.3 bits (70), Expect = 0.047
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 48 SAYMLWLNSAREQIKSEHPG--LKVTEIAKKGGEMWKSMKD 164
S Y ++ E+ K ++P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 41.9 bits (94), Expect = 6e-05
Identities = 17/49 (34%), Positives = 30/49 (61%)
Frame = +3
Query: 6 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK 152
++ K PKR +SA+ + R +I++ HP KV ++A++ G+MWK
Sbjct: 126 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWK 174
Score = 32.3 bits (70), Expect = 0.047
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 48 SAYMLWLNSAREQIKSEHPG--LKVTEIAKKGGEMWKSMKD 164
S Y ++ E+ K ++P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 6 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 164
R + K + KRPM+A+M+W R +I +P + + I+K G WK M +
Sbjct: 169 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 221
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 6 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 164
R + K + KRPM+A+M+W R +I +P + + I+K G WK M +
Sbjct: 166 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 218
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 6 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 164
R + K + KRPM+A+M+W R +I +P + + I+K G WK M +
Sbjct: 272 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 324
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 6 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 164
R + K + KRPM+A+M+W R +I +P + + I+K G WK M +
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 372
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 6 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 164
R + K + KRPM+A+M+W R +I +P + + I+K G WK M +
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 372
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 32.7 bits (71), Expect = 0.036
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +3
Query: 33 PKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 164
P+RP+ YM + ++++E+P ++ +I K G+ W + D
Sbjct: 26 PERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPD 69
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 31.9 bits (69), Expect = 0.063
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 21 MTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 167
MT K + S Y+L+ R++I E+P E++K G WK + ++
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 31.9 bits (69), Expect = 0.063
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 21 MTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 167
MT K + S Y+L+ R++I E+P E++K G WK + ++
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 31.9 bits (69), Expect = 0.063
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 21 MTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 167
MT K + S Y+L+ R++I E+P E++K G WK + ++
Sbjct: 75 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 123
>Z68006-1|CAA91998.1| 251|Caenorhabditis elegans Hypothetical
protein K09C8.2 protein.
Length = 251
Score = 30.7 bits (66), Expect = 0.14
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -3
Query: 169 LLSFIDFHISPPFLAISVTFSPGCSDLICSLALLS 65
LL+++ FH+ F A+SV+F + +C + LLS
Sbjct: 42 LLNYVSFHVGNDFYAVSVSFVHVGAVFVCIVILLS 76
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 30.7 bits (66), Expect = 0.14
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Frame = +3
Query: 6 RKKNKMT-DKP--KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 158
R+++K++ ++P +RPM+A+M++ R + ++P ++K GE W S+
Sbjct: 831 RRRSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSL 884
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 30.7 bits (66), Expect = 0.14
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Frame = +3
Query: 6 RKKNKMT-DKP--KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 158
R+++K++ ++P +RPM+A+M++ R + ++P ++K GE W S+
Sbjct: 831 RRRSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSL 884
>Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical
protein T22H6.6b protein.
Length = 640
Score = 30.7 bits (66), Expect = 0.14
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Frame = +3
Query: 6 RKKNKMT-DKP--KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 158
R+++K++ ++P +RPM+A+M++ R + ++P ++K GE W S+
Sbjct: 66 RRRSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSL 119
>Z82060-6|CAB04887.1| 301|Caenorhabditis elegans Hypothetical
protein T27F6.8 protein.
Length = 301
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 154 DFHISPPFLAISVTFSPGCSDLI 86
D H+ F+A TF P CSD++
Sbjct: 197 DLHLDSGFIADRDTFWPKCSDIV 219
>AF067217-5|AAO38635.1| 856|Caenorhabditis elegans Hypothetical
protein F56A6.1b protein.
Length = 856
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 18 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGE 143
K+T KP +P+ Y + +N + +++++ AKKG E
Sbjct: 49 KLTIKPNQPIYKYAVQVNYVFRKPDGTEATIEMSKSAKKGTE 90
>AF067217-4|AAF99978.1| 887|Caenorhabditis elegans Hypothetical
protein F56A6.1a protein.
Length = 887
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 18 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGE 143
K+T KP +P+ Y + +N + +++++ AKKG E
Sbjct: 49 KLTIKPNQPIYKYAVQVNYVFRKPDGTEATIEMSKSAKKGTE 90
>AF000265-2|AAO38667.1| 887|Caenorhabditis elegans Paz/piwi
domain-containing protein1, isoform c protein.
Length = 887
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 18 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGE 143
K+T KP +P+ Y + +N + +++++ AKKG E
Sbjct: 49 KLTIKPNQPIYKYAVQVNYVFRKPDGTEATIEMSKSAKKGTE 90
>AF000265-1|AAB52946.2| 913|Caenorhabditis elegans Paz/piwi
domain-containing protein1, isoform a protein.
Length = 913
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 18 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGE 143
K+T KP +P+ Y + +N + +++++ AKKG E
Sbjct: 75 KLTIKPNQPIYKYAVQVNYVFRKPDGTEATIEMSKSAKKGTE 116
>AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior
pharynx defect protein 1 protein.
Length = 437
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 12 KNKMTDKPKRPMSAYMLWLNSAREQIKSE--HPGLKVTEIAKKGGEMWKSM 158
K K D K+P++A+M ++ R+ + E + + E+ K+ G+ W +
Sbjct: 184 KAKKDDHVKKPLNAFMWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDL 234
>Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical
protein C31H5.3 protein.
Length = 554
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 91 LICSLALLSHSI*ADIG-RFGLSVILFFFL 5
LI SLALLS ++ AD G + L V +F L
Sbjct: 242 LISSLALLSFTLPADCGEKLNLGVTIFMSL 271
>Z81573-3|CAB04624.3| 398|Caenorhabditis elegans Hypothetical
protein M02G9.2 protein.
Length = 398
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 25 RTSRSGLCQPICCGSTVPENRSSLN 99
RTS S C +C S VP N N
Sbjct: 220 RTSCSSACLSVCASSGVPGNECQSN 244
>AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine
receptor (63.2 kD)(acr-19) protein.
Length = 554
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 91 LICSLALLSHSI*ADIG-RFGLSVILFFFL 5
LI SLALLS ++ AD G + L V +F L
Sbjct: 242 LISSLALLSFTLPADCGEKLNLGVTIFMSL 271
>U51998-8|AAA96081.2| 241|Caenorhabditis elegans Hypothetical
protein C12D12.5 protein.
Length = 241
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = +3
Query: 15 NKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 164
N T K ++ +W R+QI + ++I+K G W+ M++
Sbjct: 96 NVQTWKIRKSNDYIKVWSQQRRQQIAATGQKFHNSDISKMLGAEWRKMEE 145
>AC006618-3|AAK68251.3| 960|Caenorhabditis elegans Patched related
family protein 4 protein.
Length = 960
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 168 FYLSLISTFHLLFWLFQ*LSAQD 100
+ +++I FH L WL Q +SA D
Sbjct: 915 YLVNIIGLFHALVWLPQLISALD 937
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,999,969
Number of Sequences: 27780
Number of extensions: 59491
Number of successful extensions: 240
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 12,740,198
effective HSP length: 37
effective length of database: 11,712,338
effective search space used: 222534422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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