Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_C17
(237 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 115 7e-28
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 115 7e-28
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 26 0.76
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer... 26 0.76
SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces po... 25 1.8
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 24 2.3
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 24 3.1
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 24 3.1
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 23 5.4
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 23 5.4
SPBC800.07c |tsf1||mitochondrial translation elongation factor E... 23 7.1
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 23 7.1
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 23 7.1
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 23 7.1
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 22 9.4
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 22 9.4
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 22 9.4
SPCC4G3.17 |||HD domain|Schizosaccharomyces pombe|chr 3|||Manual 22 9.4
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo... 22 9.4
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 115 bits (277), Expect = 7e-28
Identities = 52/76 (68%), Positives = 61/76 (80%)
Frame = +2
Query: 8 RTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKLYHGKTGRVYNVTAHALGVIVNKR 187
R HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VYNVT ++GV++ K
Sbjct: 20 REHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKV 79
Query: 188 VRGRILPKRINIRIEH 235
V R + KR+N+RIEH
Sbjct: 80 VGNRYMEKRVNVRIEH 95
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 115 bits (277), Expect = 7e-28
Identities = 52/76 (68%), Positives = 61/76 (80%)
Frame = +2
Query: 8 RTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKLYHGKTGRVYNVTAHALGVIVNKR 187
R HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VYNVT ++GV++ K
Sbjct: 20 REHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKV 79
Query: 188 VRGRILPKRINIRIEH 235
V R + KR+N+RIEH
Sbjct: 80 VGNRYMEKRVNVRIEH 95
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 0.76
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -1
Query: 54 LYTFMYVESGIVPCVRIF 1
L +F+Y++SGI P + +F
Sbjct: 496 LASFLYIQSGITPIINLF 513
>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 250
Score = 25.8 bits (54), Expect = 0.76
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = -1
Query: 207 GRILPRTRLFTITPRACAVTLXTRPVLPWYNLCG-IPFCTAPLPLMSTMS 61
G +P T C + T LPW CG PF PL ++ +S
Sbjct: 177 GTPIPTTLSLVTVCGVCILKGKTHENLPWGEWCGNTPFAFHPLVVLFVLS 226
>SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 266
Score = 24.6 bits (51), Expect = 1.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 5 IRTHGTIPLSTYMKVYKVGDIVDIRG 82
IR + P+S+Y+ K GD +++RG
Sbjct: 107 IRKYEEGPVSSYIHSKKEGDTIELRG 132
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.2 bits (50), Expect = 2.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 134 GRVYNVTAHALGVIVN 181
G+ YN+T+H G VN
Sbjct: 234 GKTYNITSHVSGFYVN 249
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 23.8 bits (49), Expect = 3.1
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Frame = +2
Query: 50 YKVGDIVDIRGNGAVQKGM---------PHKLYHGKTGRVYNVTAHALGVIVNKRVRGRI 202
Y VGD VD+ NG V M +L GK + N + L ++ +R G
Sbjct: 658 YDVGDRVDVMINGTVTSAMVKEISIMSTEFRLLTGKVIQAPNSLLNTLWILNMRRSDGIA 717
Query: 203 LPKRINIR 226
P +N++
Sbjct: 718 DPVTVNLK 725
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 78 LMSTMSPTLYTFMYVESGIVPC 13
L T PTLY F+ + G++ C
Sbjct: 1067 LQITRLPTLYRFIILFMGVISC 1088
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 23.0 bits (47), Expect = 5.4
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 5 IRTHGTIPLSTYMKVYKVGDIVDIRGNG-AVQKGMPHKLY 121
+RTH + + + V K D + I NG V+KG L+
Sbjct: 753 LRTHCVVLTTNSLNVLKEADSIYILSNGKIVEKGNYEHLF 792
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 19 NYSTFHVHESVQSGRHR 69
N STF VH SG+H+
Sbjct: 323 NESTFFVHNQNSSGQHQ 339
>SPBC800.07c |tsf1||mitochondrial translation elongation factor
EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 299
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/38 (23%), Positives = 22/38 (57%)
Frame = +2
Query: 5 IRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKL 118
I +HG S ++ ++G +V I + + +KG+ +++
Sbjct: 214 IFSHGAKQSSPLQQLGRIGSMVQINSDLSTRKGLSNQI 251
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 199 PAADALVHDHAESVCGHIV 143
P+AD+ + H E++CG V
Sbjct: 485 PSADSGIRRHLEAMCGATV 503
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 199 PAADALVHDHAESVCGHIV 143
P+AD+ + H E++CG V
Sbjct: 485 PSADSGIRRHLEAMCGATV 503
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -3
Query: 184 LVHDHAESVCGHIVXTPCL 128
+++D S CGH PCL
Sbjct: 175 MLYDPVVSPCGHTFCGPCL 193
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -3
Query: 190 DALVHDHAESVCGHIVXTPCL---TVV*FVWHTLLYSAIAP 77
+++V++ + + P L + V +WHT++Y+ I P
Sbjct: 958 ESVVYEEYHPILHSNITIPILQSDSFVGILWHTIVYAYIYP 998
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/18 (38%), Positives = 9/18 (50%)
Frame = -2
Query: 86 HCP*CQRCLPLCTLSCTW 33
HC C+RC+ C W
Sbjct: 415 HCGACKRCINRYDHHCPW 432
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 22.2 bits (45), Expect = 9.4
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 210 FGRILPRTRLFTITPRACAVTLXTRPVLPWYNLCGIPFC-TAPLPLM 73
+ +PRT FTI R A TL R V+ + + FC T LPL+
Sbjct: 64 YSESMPRTIPFTILCRKLASTLKQR-VIFFTRVLLTFFCWTVLLPLI 109
>SPCC4G3.17 |||HD domain|Schizosaccharomyces pombe|chr 3|||Manual
Length = 198
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 187 ALVHDHAESVCGHI 146
A+VHD AES+ G I
Sbjct: 66 AVVHDMAESIVGDI 79
>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/22 (31%), Positives = 11/22 (50%)
Frame = +1
Query: 1 EDPHTWNYSTFHVHESVQSGRH 66
E PH W++ +H Q+ H
Sbjct: 108 EKPHVWHHEGKSLHPERQTSSH 129
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,043,117
Number of Sequences: 5004
Number of extensions: 18882
Number of successful extensions: 54
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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