Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_C17
(237 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal prote... 118 7e-28
AF038619-6|AAB92077.2| 442|Caenorhabditis elegans Hypothetical ... 29 0.58
U51995-3|AAY86262.1| 174|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z68005-4|CAA91992.2| 430|Caenorhabditis elegans Hypothetical pr... 26 3.1
U80955-6|AAG01556.1| 72|Caenorhabditis elegans Hypothetical pr... 25 5.4
AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical ... 25 5.4
Z69788-8|CAA93644.3| 483|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z29121-6|CAH19096.1| 405|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z29121-5|CAD54174.2| 403|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z22180-12|CAH19086.1| 405|Caenorhabditis elegans Hypothetical p... 25 9.5
Z22180-11|CAD54147.2| 403|Caenorhabditis elegans Hypothetical p... 25 9.5
U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical pr... 25 9.5
>L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 21 protein.
Length = 161
Score = 118 bits (283), Expect = 7e-28
Identities = 54/76 (71%), Positives = 61/76 (80%)
Frame = +2
Query: 8 RTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKLYHGKTGRVYNVTAHALGVIVNKR 187
R HG LSTY YK GD+VDI+ NGA QKGMP K YHG+TGR++NVT A+G+IVNKR
Sbjct: 20 RKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGRTGRIFNVTRGAVGIIVNKR 79
Query: 188 VRGRILPKRINIRIEH 235
VRG ILPKRINIRIEH
Sbjct: 80 VRGNILPKRINIRIEH 95
>AF038619-6|AAB92077.2| 442|Caenorhabditis elegans Hypothetical
protein F56A11.6 protein.
Length = 442
Score = 28.7 bits (61), Expect = 0.58
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 124 R*DRACXQCDRTRSRRDREQARPRQDPTETHQHPHRAR 237
R DR+ + DR +SR DRE+ R RQD ++T R R
Sbjct: 400 RDDRSEERKDR-KSRDDRERPRSRQDKSKTRSVEDRPR 436
>U51995-3|AAY86262.1| 174|Caenorhabditis elegans Hypothetical
protein F07G6.9 protein.
Length = 174
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 130 DRACXQCDRTRSRRDREQARPRQDPT 207
D+ QCD + SR DR++ P++ P+
Sbjct: 33 DKKKSQCDHSGSRDDRKRQDPKKTPS 58
>Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical
protein W06F12.2c protein.
Length = 502
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 135 PVLPWYNLCGIPFCTAPLPLMSTMSPTLYTFMYVESGIVPCVR 7
PV P Y+ G+P PLP +P M V+ + P V+
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVK 268
>Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical
protein W06F12.2b protein.
Length = 568
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 135 PVLPWYNLCGIPFCTAPLPLMSTMSPTLYTFMYVESGIVPCVR 7
PV P Y+ G+P PLP +P M V+ + P V+
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVK 268
>Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical
protein W06F12.2a protein.
Length = 562
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 135 PVLPWYNLCGIPFCTAPLPLMSTMSPTLYTFMYVESGIVPCVR 7
PV P Y+ G+P PLP +P M V+ + P V+
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVK 262
>Z68005-4|CAA91992.2| 430|Caenorhabditis elegans Hypothetical
protein F59F3.2 protein.
Length = 430
Score = 26.2 bits (55), Expect = 3.1
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = -3
Query: 133 CLTVV*FVWHTLLYSAIAPNVNDVSHFVHFHVRG 32
C+++ + T +Y I +N +SH ++ H +G
Sbjct: 21 CISIFLIIASTTMYIFIGLKINHISHRLYNHAKG 54
>U80955-6|AAG01556.1| 72|Caenorhabditis elegans Hypothetical
protein T04C9.3 protein.
Length = 72
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 145 QCDRTRSRRDREQARPRQDPTETHQ 219
+CD R R+RE+ R R+ E+ Q
Sbjct: 28 ECDGMRRERERERERERERERESEQ 52
>AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical
protein Y119D3B.12a protein.
Length = 339
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 154 RTRSR-RDREQARPRQDPTETHQHPHRA 234
R RSR R ++ R+ TE H H HR+
Sbjct: 260 RKRSRSRSTDRGADRKRSTEQHHHSHRS 287
>Z69788-8|CAA93644.3| 483|Caenorhabditis elegans Hypothetical
protein F09A5.1 protein.
Length = 483
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 157 CGHIVXTPCLTVV*FVWHT 101
CG ++ TPCL VV H+
Sbjct: 320 CGALISTPCLVVVFVFGHS 338
>Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical
protein ZK1067.7 protein.
Length = 373
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = -2
Query: 92 QRHC-P*CQ-RCLPLCTLSCT 36
Q+ C P CQ +C+P C+ SCT
Sbjct: 218 QQACQPTCQPQCMPSCSSSCT 238
>Z29121-6|CAH19096.1| 405|Caenorhabditis elegans Hypothetical
protein ZK757.4b protein.
Length = 405
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/36 (25%), Positives = 14/36 (38%)
Frame = -2
Query: 140 HALSYRGIICVAYPFVQRHCP*CQRCLPLCTLSCTW 33
H + + C P HC C++C+ C W
Sbjct: 131 HGIRFCDKCCCIKPDRSHHCSMCEQCVLKFDHHCPW 166
>Z29121-5|CAD54174.2| 403|Caenorhabditis elegans Hypothetical
protein ZK757.4a protein.
Length = 403
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/36 (25%), Positives = 14/36 (38%)
Frame = -2
Query: 140 HALSYRGIICVAYPFVQRHCP*CQRCLPLCTLSCTW 33
H + + C P HC C++C+ C W
Sbjct: 129 HGIRFCDKCCCIKPDRSHHCSMCEQCVLKFDHHCPW 164
>Z22180-12|CAH19086.1| 405|Caenorhabditis elegans Hypothetical
protein ZK757.4b protein.
Length = 405
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/36 (25%), Positives = 14/36 (38%)
Frame = -2
Query: 140 HALSYRGIICVAYPFVQRHCP*CQRCLPLCTLSCTW 33
H + + C P HC C++C+ C W
Sbjct: 131 HGIRFCDKCCCIKPDRSHHCSMCEQCVLKFDHHCPW 166
>Z22180-11|CAD54147.2| 403|Caenorhabditis elegans Hypothetical
protein ZK757.4a protein.
Length = 403
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/36 (25%), Positives = 14/36 (38%)
Frame = -2
Query: 140 HALSYRGIICVAYPFVQRHCP*CQRCLPLCTLSCTW 33
H + + C P HC C++C+ C W
Sbjct: 129 HGIRFCDKCCCIKPDRSHHCSMCEQCVLKFDHHCPW 164
>U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical
protein T09D3.3 protein.
Length = 592
Score = 24.6 bits (51), Expect = 9.5
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Frame = -1
Query: 195 PRTRLFTITPRACAVTLXTRP-----VLPWYNLCGIPFCTAPLPLMSTMS-PTLYTF 43
P+T +FT TP C T T V + T P+P+ ST + PT T+
Sbjct: 433 PKTTIFTTTPVPCPTTTSTTTSATTLVPTTSSSTTTTTTTTPVPVTSTTTEPTTTTY 489
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,918,057
Number of Sequences: 27780
Number of extensions: 112409
Number of successful extensions: 397
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 58
effective length of database: 11,128,958
effective search space used: 222579160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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