Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_C16
         (191 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239           26   4.9  
01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138           26   4.9  
12_01_0913 + 8882193-8883510,8887633-8887865,8889619-8889871,889...    25   6.4  
02_05_0167 - 26415319-26415494,26415591-26415840,26415909-264159...    25   6.4  
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610...    25   6.4  
06_01_0917 - 7077934-7080339                                           25   8.5  
04_04_1271 - 32282865-32283167,32283429-32283561,32283683-322839...    25   8.5  

>07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239
          Length = 569

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 110 RIAPVSLHLHSPPLVHPCKLPP 45
           R++P+ L   +PPL  P  LPP
Sbjct: 106 RVSPIDLDDSAPPLPLPLPLPP 127


>01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138
          Length = 244

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -1

Query: 101 PVSLHLHSPPLVHPCKLPPCIIPNTIHAFS 12
           PV      PP+   C   PC  P++   FS
Sbjct: 50  PVCFEPFKPPIFQACSYEPCFCPDSGCGFS 79


>12_01_0913 +
           8882193-8883510,8887633-8887865,8889619-8889871,
           8891281-8891470,8891641-8891773,8891797-8891886
          Length = 738

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 183 LSSPGKNFTLSLFSPDAS 130
           L SPG +FTL  FSP A+
Sbjct: 53  LVSPGGSFTLGFFSPAAT 70


>02_05_0167 -
           26415319-26415494,26415591-26415840,26415909-26415974,
           26416457-26416600,26416813-26416868,26416966-26417101,
           26417190-26417277,26417379-26417482,26418515-26419180,
           26419337-26419432,26419974-26420242,26420334-26420489,
           26421153-26421192
          Length = 748

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 77  ANEDEGKLELFSGVVIEKDASGENKLNVKFFPGEL 181
           A E++GKL L  G +++K A+   K N+K   G++
Sbjct: 497 AQEEDGKLFLQKGPLLKKLAAIVPKCNLKSIGGDV 531


>01_05_0439 -
           22159425-22159520,22160137-22160345,22161028-22161066,
           22161196-22161356,22161447-22161518,22162002-22162183,
           22162580-22162703,22164196-22164299,22165526-22165725,
           22165838-22166069,22166156-22166239,22166329-22166386,
           22166724-22166771,22167924-22168081,22168451-22168501,
           22168585-22168658,22168760-22168835,22169685-22169729,
           22169833-22169899,22169978-22170095,22170580-22170775,
           22171551-22171640,22171985-22172039,22172755-22172975,
           22173362-22173454,22173608-22173721,22173918-22173981,
           22174081-22174181,22174306-22174447,22174528-22174729,
           22174883-22174976,22176172-22176348
          Length = 1248

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 110 RIAPVSLHLHSPPLVHPCKLPPCIIPNTIHAFSQHL 3
           ++ P S  L+ PP   P +LP C++P  +  +S  L
Sbjct: 41  QLPPSSHALYPPP---PPQLPTCVLPAGVRIYSSGL 73


>06_01_0917 - 7077934-7080339
          Length = 801

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -1

Query: 110 RIAPVSLHLHS-PPLVHPCKLPPCIIPNTIHAFSQHL 3
           R  PV+ H    P L+    LP C +P  I    +HL
Sbjct: 129 RSLPVTQHHRMWPLLLRLASLPGCPVPTAIRVLRRHL 165


>04_04_1271 -
           32282865-32283167,32283429-32283561,32283683-32283908,
           32284058-32284274,32284398-32284558,32285309-32285449,
           32285621-32286944
          Length = 834

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 183 LSSPGKNFTLSLFSPDASFSMTT 115
           L S G +FTL  FSP +S S +T
Sbjct: 43  LVSAGGSFTLGFFSPASSSSSST 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,336,932
Number of Sequences: 37544
Number of extensions: 85475
Number of successful extensions: 231
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 14,793,348
effective HSP length: 43
effective length of database: 13,178,956
effective search space used: 263579120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)