Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_C14
(246 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 38 1e-04
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 37 4e-04
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 36 6e-04
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.004
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 32 0.009
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 30 0.049
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 30 0.049
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.065
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 0.46
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 25 1.1
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 25 1.4
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 25 1.4
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 25 1.4
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 24 2.4
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 23 4.3
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 23 5.6
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 23 5.6
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha... 23 5.6
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 23 7.4
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 23 7.4
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 23 7.4
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 23 7.4
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 23 7.4
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 23 7.4
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 23 7.4
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 22 9.8
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr... 22 9.8
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 22 9.8
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 22 9.8
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 22 9.8
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 22 9.8
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 22 9.8
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 38.3 bits (85), Expect = 1e-04
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
GF F EF++P DAE AI GLDG+ G + + +
Sbjct: 352 GFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFA 386
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 36.7 bits (81), Expect = 4e-04
Identities = 20/34 (58%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +1
Query: 43 FAFVEFEDPRDAEDAIRGLDGRTI--CGGRARVE 138
FAFVE+ED RDAEDA + GR + GG RVE
Sbjct: 49 FAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVE 82
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 36.3 bits (80), Expect = 6e-04
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTICGGRARVE 138
GF FVE ED RDA D + G+ G R VE
Sbjct: 38 GFGFVEVEDARDARDIVNDFQGKEFMGSRIVVE 70
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 33.5 bits (73), Expect = 0.004
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 43 FAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMSN 147
+AFVEF++P DA++A+ ++ +C RV +N
Sbjct: 48 YAFVEFDEPEDAKEAMENMNYSILCDRCIRVSPAN 82
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 32.3 bits (70), Expect = 0.009
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +1
Query: 25 ARNPPGFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMSN 147
+++P FAF+ FE+ A++AI L+G + G +VE ++
Sbjct: 62 SKSPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVEYTH 102
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 29.9 bits (64), Expect = 0.049
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 31 NPPGFAFVEFEDPRDAEDAIRGLDGRTICG 120
NP GFA+++F D DA A LD + G
Sbjct: 362 NPKGFAYIDFHDADDAVRAYLELDAKPFQG 391
Score = 29.9 bits (64), Expect = 0.049
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMSN 147
GF FVEF+D A A+ ++G + G + +++S+
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSH 701
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 43 FAFVEFEDPRDAEDAIRGLD 102
FAF+ F++ DA+ AIR L+
Sbjct: 48 FAFIGFKNEEDADKAIRYLN 67
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 29.9 bits (64), Expect = 0.049
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 34 PPGFAFVEFEDPRDAEDAIRGLDGRTI 114
P G AFV F + D + AI L+G+T+
Sbjct: 88 PSGIAFVTFNNQEDVDKAIETLNGKTL 114
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 29.5 bits (63), Expect = 0.065
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 34 PPGFAFVEFEDPRDAEDAIRGLDGRTICGGRARVE 138
P G+ F E+ DP A A+R L+ R RV+
Sbjct: 45 PKGYGFCEYHDPATAASAVRNLNNYDAGTRRLRVD 79
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 0.46
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMSN 147
G+ +V+FE P A+ A+ + I G +++SN
Sbjct: 305 GYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSN 340
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 1.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTICGGR 126
GF V+FE+ DA +I L+G GGR
Sbjct: 321 GFGVVQFENENDAASSIEKLNGYRY-GGR 348
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 25.0 bits (52), Expect = 1.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 55 EFEDPRDAEDAIRGLDGRTI 114
EF D RDA A+ LDGR I
Sbjct: 335 EFYDTRDASFALDELDGRII 354
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 1.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 142 TSLRERGLHILYVHLNLGWRPQRHE 68
TS +R LH+L++ + + P+ HE
Sbjct: 257 TSSTKRNLHLLWIEASARFFPEEHE 281
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 25.0 bits (52), Expect = 1.4
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 28 RNPPGFAFVEFEDPRDAEDAIR 93
+ P GF FVE+ + +DA D+++
Sbjct: 70 KTPCGFCFVEYFENQDALDSLK 91
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 24.2 bits (50), Expect = 2.4
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 31 NPPGFAFVEFEDPRDAEDAI 90
+P GFA++EF +P +A+
Sbjct: 94 HPKGFAYIEFSEPSLVPNAL 113
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 23.4 bits (48), Expect = 4.3
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -1
Query: 45 ETGWISGHPYI 13
+ GWI+GH YI
Sbjct: 315 DVGWITGHTYI 325
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 23.0 bits (47), Expect = 5.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTI 114
GF F++F + A A+R L+GR I
Sbjct: 540 GFGFMQFISHKYALMALRWLNGREI 564
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 23.0 bits (47), Expect = 5.6
Identities = 6/17 (35%), Positives = 10/17 (58%)
Frame = +2
Query: 2 HEGEMYGWPEIHPVSLL 52
H YG P +HP+ ++
Sbjct: 530 HSHRSYGTPPVHPIDII 546
>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 23.0 bits (47), Expect = 5.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 60 KFYKSETGWISGHP 19
KFYK+ G SGHP
Sbjct: 228 KFYKACMGHCSGHP 241
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 22.6 bits (46), Expect = 7.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTI 114
G F +FE+ A+ ++ LDG+ I
Sbjct: 92 GLVFADFENVDGADLCVQELDGKQI 116
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 22.6 bits (46), Expect = 7.4
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = -3
Query: 133 RERGLHILYVHLNLGWRPQRHEDLQILQKRNRVDFWPP 20
R+ + Y+ L LGW +I R +++ W P
Sbjct: 62 RKSIFRLRYIFLILGWLAIGFLSYKIANSRLKLNIWDP 99
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 22.6 bits (46), Expect = 7.4
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +1
Query: 43 FAFVEFEDPRDAEDAIRGLDGRTICGGRARVE 138
++FV+F++ DA A+ + G R+E
Sbjct: 123 YSFVQFQNTDDASKALSEAQNTILDGRHIRIE 154
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 22.6 bits (46), Expect = 7.4
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +1
Query: 46 AFVEFEDPRDAEDAIRGLDGRTICGGR 126
A VEF D DA A L+G I GGR
Sbjct: 912 AVVEFLDIHDAGKASLALEGHEI-GGR 937
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 22.6 bits (46), Expect = 7.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 88 WRPQRHEDLQILQKRNRV 35
WR Q EDL+ + K +RV
Sbjct: 764 WRFQSGEDLEAMDKASRV 781
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 22.6 bits (46), Expect = 7.4
Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -3
Query: 244 PSVTTIIAAVYHMDVVVAETAAEDHGRHNL-VHH*TSLRERGLHILYVHLNLGWRPQRHE 68
P ++ ++ H + ++ +H ++ + S+R RG+ + H RP+
Sbjct: 90 PYISPTMSYTNHSPANLTRNSSFNHQHYSTTLRSPPSMRGRGIDVNSSHYPHISRPRTSS 149
Query: 67 DLQILQKRNRVDFW 26
D Q + R VD++
Sbjct: 150 DSQKMYTRAPVDYY 163
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 22.6 bits (46), Expect = 7.4
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -1
Query: 39 GWISGHPYISPS 4
GW+S P+I+PS
Sbjct: 167 GWLSMEPFITPS 178
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 22.2 bits (45), Expect = 9.8
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +2
Query: 218 RCYDCGDRG 244
RCY+CG+ G
Sbjct: 18 RCYNCGENG 26
>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 22.2 bits (45), Expect = 9.8
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +2
Query: 194 YHHVHMIDRCYDC 232
Y+ VH+ RCY C
Sbjct: 4 YYPVHLKSRCYVC 16
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 22.2 bits (45), Expect = 9.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 25 ARNPPGFAFVEFEDPRDAE 81
+RNPP F ++ E P D +
Sbjct: 76 SRNPPIFEAIQGEQPSDID 94
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 22.2 bits (45), Expect = 9.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 123 PRSRRDV*WWTRL 161
PRSRRD +WT L
Sbjct: 720 PRSRRDDPYWTDL 732
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 22.2 bits (45), Expect = 9.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTICGGRARVE 138
G+ F EF D A+R L+ + + RVE
Sbjct: 49 GYGFCEFFDSETTAMAVRKLNNSELGPRKIRVE 81
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 22.2 bits (45), Expect = 9.8
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTICGGRARVE 138
GFAF+++ED R A+ + + RV+
Sbjct: 73 GFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVD 105
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 22.2 bits (45), Expect = 9.8
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = +2
Query: 158 VMAAVVLRRGLCYHHVHMIDRCYDCGDR 241
+ AV++ + + + H H++ C D DR
Sbjct: 321 LQGAVLIVKTVHFRHAHVLVHCSDGWDR 348
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 926,686
Number of Sequences: 5004
Number of extensions: 13715
Number of successful extensions: 54
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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