Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_C14
(246 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 79 5e-16
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 79 5e-16
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 79 5e-16
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 51 1e-07
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 49 4e-07
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 49 4e-07
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 46 5e-06
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 46 5e-06
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 46 5e-06
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 45 8e-06
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 42 4e-05
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 42 4e-05
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 42 4e-05
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 35 0.007
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 35 0.007
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 35 0.009
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 33 0.020
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 33 0.027
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 33 0.036
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 31 0.11
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 31 0.11
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 31 0.11
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 30 0.25
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 30 0.25
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 30 0.25
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 30 0.25
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 29 0.33
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 29 0.33
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 29 0.33
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 29 0.33
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 29 0.44
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 28 0.76
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 28 0.76
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 28 0.76
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 28 0.76
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 28 0.76
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 28 0.76
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 28 0.76
AC006663-2|AAF39900.2| 603|Caenorhabditis elegans Hypothetical ... 28 0.76
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 28 1.0
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 28 1.0
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 27 2.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 27 2.3
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 26 3.1
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 26 3.1
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 26 4.1
AC006729-2|AAM15613.1| 165|Caenorhabditis elegans Hypothetical ... 26 4.1
AC006729-1|AAK93861.1| 319|Caenorhabditis elegans Hypothetical ... 26 4.1
Z78417-10|CAB01688.2| 745|Caenorhabditis elegans Hypothetical p... 25 5.4
U13644-8|AAB52679.1| 471|Caenorhabditis elegans Hypothetical pr... 25 5.4
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 25 5.4
Z77657-5|CAB01145.2| 381|Caenorhabditis elegans Hypothetical pr... 25 7.1
AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf (pumilio/... 25 7.1
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z81042-3|CAB02794.2| 660|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 25 9.4
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 25 9.4
U53141-3|AAA96105.3| 596|Caenorhabditis elegans Hypothetical pr... 25 9.4
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 25 9.4
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 25 9.4
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 25 9.4
AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA ... 25 9.4
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 25 9.4
AM748821-1|CAO72175.2| 596|Caenorhabditis elegans hexosaminidas... 25 9.4
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 78.6 bits (185), Expect = 5e-16
Identities = 35/47 (74%), Positives = 39/47 (82%)
Frame = +1
Query: 4 RGRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
R R VWVAR PPGFAFVE++D RDAEDA+R LDG ICG RARVE+S
Sbjct: 28 RIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 78.6 bits (185), Expect = 5e-16
Identities = 35/47 (74%), Positives = 39/47 (82%)
Frame = +1
Query: 4 RGRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
R R VWVAR PPGFAFVE++D RDAEDA+R LDG ICG RARVE+S
Sbjct: 28 RIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 78.6 bits (185), Expect = 5e-16
Identities = 35/47 (74%), Positives = 39/47 (82%)
Frame = +1
Query: 4 RGRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
R R VWVAR PPGFAFVE++D RDAEDA+R LDG ICG RARVE+S
Sbjct: 28 RIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 50.8 bits (116), Expect = 1e-07
Identities = 21/44 (47%), Positives = 32/44 (72%)
Frame = +1
Query: 10 RNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEM 141
+++W+A+ PPGFAFV F+ A DA++ L+G+ IC A+VEM
Sbjct: 55 KSIWMAKRPPGFAFVTFKRTVHAFDAVKYLNGKKICDLEAKVEM 98
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 49.2 bits (112), Expect = 4e-07
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +1
Query: 37 PGFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
P FAFVEFED RDAEDA+R DG G R RVE +
Sbjct: 46 PAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFT 81
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 49.2 bits (112), Expect = 4e-07
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +1
Query: 37 PGFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
P FAFVEFED RDAEDA+R DG G R RVE +
Sbjct: 46 PAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFT 81
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 45.6 bits (103), Expect = 5e-06
Identities = 23/37 (62%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTICGGRAR--VEMS 144
GFAFV+FED RDAEDA LDG+T+ G R VEM+
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMA 72
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 45.6 bits (103), Expect = 5e-06
Identities = 23/37 (62%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTICGGRAR--VEMS 144
GFAFV+FED RDAEDA LDG+T+ G R VEM+
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMA 72
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 45.6 bits (103), Expect = 5e-06
Identities = 23/37 (62%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTICGGRAR--VEMS 144
GFAFV+FED RDAEDA LDG+T+ G R VEM+
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMA 72
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 44.8 bits (101), Expect = 8e-06
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTICGGRARVE 138
GF FV+F+D RDA+DA+ L+G+ +CG R +E
Sbjct: 36 GFGFVDFQDQRDADDAVHDLNGKELCGERVILE 68
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 42.3 bits (95), Expect = 4e-05
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
GF FVEF+D RDAEDA+ L+G+ + G R ++ S
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS 71
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 42.3 bits (95), Expect = 4e-05
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
GF FVEF+D RDAEDA+ L+G+ + G R ++ S
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS 71
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 42.3 bits (95), Expect = 4e-05
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
GF FVEF+D RDAEDA+ L+G+ + G R ++ S
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS 71
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 35.1 bits (77), Expect = 0.007
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 25 ARNPPGFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
+R GF FV F + RDAE A+ DG+ + G RV ++
Sbjct: 56 SRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLA 95
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 35.1 bits (77), Expect = 0.007
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 25 ARNPPGFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
+R GF FV F + RDAE A+ DG+ + G RV ++
Sbjct: 56 SRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLA 95
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 34.7 bits (76), Expect = 0.009
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1
Query: 34 PPGFAFVEFEDPRDAEDAIRGLDGRTICGGRARVE 138
P G+ F+EF D + AE AIR L+G + G RV+
Sbjct: 58 PKGYGFIEFPDIQTAEVAIRNLNGYELSGRILRVD 92
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 33.5 bits (73), Expect = 0.020
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 34 PPGFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMSN 147
P GFAFVEF + A+ A+ L+G G RV +N
Sbjct: 46 PRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYAN 83
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 33.1 bits (72), Expect = 0.027
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
G+ +VE+++ DAE +I+ +DG I G VEM+
Sbjct: 176 GYGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVEMT 210
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 32.7 bits (71), Expect = 0.036
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 34 PPGFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMSN 147
P GFAF+EF + A+ A+ ++G G RV ++N
Sbjct: 45 PRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLAN 82
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 31.1 bits (67), Expect = 0.11
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 28 RNPPGFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
R GF FV ++P DA+ A +G TI G R V ++
Sbjct: 18 RGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 56
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 31.1 bits (67), Expect = 0.11
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 28 RNPPGFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
R GF FV ++P DA+ A +G TI G R V ++
Sbjct: 136 RGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 174
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 31.1 bits (67), Expect = 0.11
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 28 RNPPGFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
R GF FV ++P DA+ A +G TI G R V ++
Sbjct: 136 RGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 174
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 29.9 bits (64), Expect = 0.25
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 28 RNPPGFAFVEFEDPRDAEDAIRGLDGRTICGGRARV 135
R GF FV E P+DAE A + L G I G + V
Sbjct: 189 RGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEV 224
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 29.9 bits (64), Expect = 0.25
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
GFAF+ + AE A +DGR I G + RV +
Sbjct: 151 GFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFA 185
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 29.9 bits (64), Expect = 0.25
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
GFAF+ + AE A +DGR I G + RV +
Sbjct: 151 GFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFA 185
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 29.9 bits (64), Expect = 0.25
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 28 RNPPGFAFVEFEDPRDAEDAIRGLDGRTICGGRARV 135
R GF FV E P+DAE A + L G I G + V
Sbjct: 189 RGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEV 224
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 29.5 bits (63), Expect = 0.33
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 13 NVWVARNPPGFAFVEFEDPRDAEDAIRGLDG 105
NV N G+AF E+ DP + AI GL+G
Sbjct: 323 NVDSQGNSKGYAFAEYLDPTLTDQAIAGLNG 353
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 29.5 bits (63), Expect = 0.33
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 13 NVWVARNPPGFAFVEFEDPRDAEDAIRGLDG 105
NV N G+AF E+ DP + AI GL+G
Sbjct: 323 NVDSQGNSKGYAFAEYLDPTLTDQAIAGLNG 353
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 29.5 bits (63), Expect = 0.33
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 13 NVWVARNPPGFAFVEFEDPRDAEDAIRGLDG 105
NV N G+AF E+ DP + AI GL+G
Sbjct: 298 NVDSQGNSKGYAFAEYLDPTLTDQAIAGLNG 328
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 29.5 bits (63), Expect = 0.33
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 13 NVWVARNPPGFAFVEFEDPRDAEDAIRGLDG 105
NV N G+AF E+ DP + AI GL+G
Sbjct: 301 NVDSQGNSKGYAFAEYLDPTLTDQAIAGLNG 331
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 29.1 bits (62), Expect = 0.44
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 25 ARNPPGFAFVEFEDPRDAEDAIRGLDGRTICGGRARVE 138
A P G+AF+E+ D + A + DG + G R V+
Sbjct: 140 AGKPRGYAFIEYSDKAEMHTAYKKADGIKVDGKRLVVD 177
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 28.3 bits (60), Expect = 0.76
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 34 PPGFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
P GFAFVEF + A+ A+ +G G RV ++
Sbjct: 44 PRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLA 80
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 28.3 bits (60), Expect = 0.76
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
G+A+V F+ P DAE A+ ++ I G R+ S
Sbjct: 99 GYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWS 133
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 28.3 bits (60), Expect = 0.76
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
G+A+V F+ P DAE A+ ++ I G R+ S
Sbjct: 99 GYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWS 133
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 28.3 bits (60), Expect = 0.76
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTIC 117
GF FV FE P +A A+ ++ + +C
Sbjct: 358 GFGFVCFEKPEEATSAVTEMNSKMVC 383
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
G+A+V F+ P DAE A+ ++ + G R+ S
Sbjct: 74 GYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWS 108
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 28.3 bits (60), Expect = 0.76
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTIC 117
GF FV FE P +A A+ ++ + +C
Sbjct: 298 GFGFVCFEKPEEATSAVTEMNSKMVC 323
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
G+A+V F+ P DAE A+ ++ + G R+ S
Sbjct: 74 GYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWS 108
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 28.3 bits (60), Expect = 0.76
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTIC 117
GF FV FE P +A A+ ++ + +C
Sbjct: 295 GFGFVCFEKPEEATSAVTEMNSKMVC 320
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 28.3 bits (60), Expect = 0.76
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTIC 117
GF FV FE P +A A+ ++ + +C
Sbjct: 358 GFGFVCFEKPEEATSAVTEMNSKMVC 383
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
G+A+V F+ P DAE A+ ++ + G R+ S
Sbjct: 74 GYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWS 108
>AC006663-2|AAF39900.2| 603|Caenorhabditis elegans Hypothetical
protein H24K24.4 protein.
Length = 603
Score = 28.3 bits (60), Expect = 0.76
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 28 RNPPGFAFVEFEDPRDAEDAIRGLDG 105
R+ +A+V FE P DA+ AI +DG
Sbjct: 60 RHMSDYAYVTFETPEDAQKAINLVDG 85
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 31 NPPGFAFVEFEDPRDAEDAIRGLDGRTICGGRARVE 138
N G+ FV+FE P+ A A+ GL+ + A+++
Sbjct: 146 NCKGYGFVDFESPQAAAAAVDGLNTEGVQAQMAKLQ 181
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 31 NPPGFAFVEFEDPRDAEDAIRGLDGRTICGGRARVE 138
N G+ FV+FE P+ A A+ GL+ + A+++
Sbjct: 120 NCKGYGFVDFESPQAAAAAVDGLNTEGVQAQMAKLQ 155
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMSN 147
GF FV+F DA+ A++ + G + G +++S+
Sbjct: 690 GFGFVQFYTAFDAKTALKDMQGELLDGHSLELKISH 725
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDG 105
GFA+V FE+ + AI GL+G
Sbjct: 54 GFAYVTFENEQQMNTAISGLNG 75
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 22 VARNPPGFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMSN 147
V N GF FVEF DA+ AI+ L+ + G +V ++
Sbjct: 49 VTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKAS 90
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 22 VARNPPGFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMSN 147
V N GF FVEF DA+ AI+ L+ + G +V ++
Sbjct: 59 VTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKAS 100
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 34 PPGFAFVEFEDPRDAEDAIRGLD 102
P GFAFV FE DA AI L+
Sbjct: 216 PKGFAFVTFESRDDAARAIAELN 238
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTI 114
G+ FV F D D A+R +DG+ +
Sbjct: 245 GYGFVSFRDSEDYVRAMREMDGKYV 269
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
GF FVEF+ DA AI ++ + G RV +
Sbjct: 53 GFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNFA 87
>AC006729-2|AAM15613.1| 165|Caenorhabditis elegans Hypothetical
protein Y24D9A.8b protein.
Length = 165
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -1
Query: 87 GVLSVTRIFKFYK 49
GV+SVTRIF +YK
Sbjct: 48 GVVSVTRIFNYYK 60
>AC006729-1|AAK93861.1| 319|Caenorhabditis elegans Hypothetical
protein Y24D9A.8a protein.
Length = 319
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -1
Query: 87 GVLSVTRIFKFYK 49
GV+SVTRIF +YK
Sbjct: 202 GVVSVTRIFNYYK 214
>Z78417-10|CAB01688.2| 745|Caenorhabditis elegans Hypothetical
protein C35C5.2 protein.
Length = 745
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 84 VLSVTRIFKFYKSETGWI 31
+L V+R K Y+++TGWI
Sbjct: 379 LLEVSRALKQYQNQTGWI 396
>U13644-8|AAB52679.1| 471|Caenorhabditis elegans Hypothetical
protein F56D2.1 protein.
Length = 471
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 196 VAETAAEDHGRHNLVHH*TSLRERGLHILY 107
+ + DHG HNL H + ++ GL +Y
Sbjct: 316 LVQKIGHDHGVHNLQHFNINYKDTGLFGIY 345
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDG 105
GF FV+F + A+++ R L+G
Sbjct: 120 GFGFVQFNEAGSADESCRSLNG 141
>Z77657-5|CAB01145.2| 381|Caenorhabditis elegans Hypothetical
protein F08H9.8 protein.
Length = 381
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -1
Query: 129 SAASTYCTSI*TSDGVLSVTRIFKFYKSETGWISGHPYIS 10
S S+YC S+ + +S++ F F K+ T + P++S
Sbjct: 50 SETSSYCQSLGGTQVFISLSYEFTFMKTFTQGLFAQPWLS 89
>AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf
(pumilio/fbf) domain-containingprotein 7 protein.
Length = 485
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 7 GRNVWVARNPPGFAFVEFEDPRDAEDAIR 93
G+ + A +P G F+E P D+ED IR
Sbjct: 91 GQLIDFAIDPSGVKFLEANYPLDSEDQIR 119
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 43 FAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
+AF+EF++ + E A +D I R V+ S
Sbjct: 284 YAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFS 317
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 43 FAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
+AF+EF++ + E A +D I R V+ S
Sbjct: 284 YAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFS 317
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 43 FAFVEFEDPRDAEDAIRGLDGRTICGGRARVEMS 144
+AF+EF++ + E A +D I R V+ S
Sbjct: 215 YAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFS 248
>Z81042-3|CAB02794.2| 660|Caenorhabditis elegans Hypothetical
protein C27H6.3 protein.
Length = 660
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 135 YASAASTYCTSI*TSDGVLSVTRIFKFYKSETGWI 31
+AS + Y TS +G++S F+F + + WI
Sbjct: 185 FASKKNVYGTSFNVRNGIMSRPPRFEFARHDQRWI 219
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 28 RNPPGFAFVEFEDPRDAEDAIRGL 99
+ P GF FVE+ DAE A++ +
Sbjct: 75 KTPCGFCFVEYYTREDAELALQNI 98
>Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 34 PPGFAFVEFEDPRDAEDAIRGLDGRTICGGR 126
P G AFV+FE DA+ + L R + G R
Sbjct: 320 PTGDAFVQFETEEDAQQGL--LKHRQVIGQR 348
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 100 LNLGWRPQRHEDLQILQKRNRVDF 29
+ L WR Q EDL Q+ +DF
Sbjct: 3505 MTLRWRKQLEEDLVYFQQNYNLDF 3528
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 100 LNLGWRPQRHEDLQILQKRNRVDF 29
+ L WR Q EDL Q+ +DF
Sbjct: 3516 MTLRWRKQLEEDLVYFQQNYNLDF 3539
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 100 LNLGWRPQRHEDLQILQKRNRVDF 29
+ L WR Q EDL Q+ +DF
Sbjct: 3516 MTLRWRKQLEEDLVYFQQNYNLDF 3539
>Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 34 PPGFAFVEFEDPRDAEDAIRGLDGRTICGGR 126
P G AFV+FE DA+ + L R + G R
Sbjct: 320 PTGDAFVQFETEEDAQQGL--LKHRQVIGQR 348
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 40 GFAFVEFEDPRDAEDAIRGLDGRTICGGRARVE 138
G+A VE+E ++A +AI + + G +V+
Sbjct: 97 GYALVEYETQKEANEAIDQSNDTDLLGQNVKVD 129
>U53141-3|AAA96105.3| 596|Caenorhabditis elegans Hypothetical
protein C14C11.3 protein.
Length = 596
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/36 (27%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 109 YVHLNLGWRPQR-HEDLQILQKRNRVDFWPPIHFSL 5
+++ NLG ++ H L+ +Q+ +++ WP HF +
Sbjct: 559 FIYENLGEMSEKLHGYLEEIQRLDKLRAWPKRHFPI 594
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 7 GRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 114
G+ V+ R P G P DA A+ GLDG I
Sbjct: 6477 GKTVYPVRGPDGTPL-----PTDASGAVIGLDGEPI 6507
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 7 GRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 114
G+ V+ R P G P DA A+ GLDG I
Sbjct: 8967 GKTVYPVRGPDGTPL-----PTDASGAVIGLDGEPI 8997
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 7 GRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 114
G+ V+ R P G P DA A+ GLDG I
Sbjct: 9112 GKTVYPVRGPDGTPL-----PTDASGAVIGLDGEPI 9142
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 7 GRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 114
G+ V+ R P G P DA A+ GLDG I
Sbjct: 6522 GKTVYPVRGPDGTPL-----PTDASGAVIGLDGEPI 6552
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 7 GRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 114
G+ V+ R P G P DA A+ GLDG I
Sbjct: 9012 GKTVYPVRGPDGTPL-----PTDASGAVIGLDGEPI 9042
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 7 GRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 114
G+ V+ R P G P DA A+ GLDG I
Sbjct: 9157 GKTVYPVRGPDGTPL-----PTDASGAVIGLDGEPI 9187
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 100 LNLGWRPQRHEDLQILQKRNRVDF 29
+ L WR Q EDL Q+ +DF
Sbjct: 3516 MTLRWRKQLEEDLVYFQQNYNLDF 3539
>AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA
binding protein SYM-2 protein.
Length = 618
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 34 PPGFAFVEFEDPRDAEDAIRGLDGRTICGGR 126
P G AFV+FE DA+ + L R + G R
Sbjct: 320 PTGDAFVQFETEEDAQQGL--LKHRQVIGQR 348
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 7 GRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 114
G+ V+ R P G P DA A+ GLDG I
Sbjct: 6522 GKTVYPVRGPDGTPL-----PTDASGAVIGLDGEPI 6552
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 7 GRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 114
G+ V+ R P G P DA A+ GLDG I
Sbjct: 9012 GKTVYPVRGPDGTPL-----PTDASGAVIGLDGEPI 9042
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 7 GRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 114
G+ V+ R P G P DA A+ GLDG I
Sbjct: 9157 GKTVYPVRGPDGTPL-----PTDASGAVIGLDGEPI 9187
>AM748821-1|CAO72175.2| 596|Caenorhabditis elegans hexosaminidase
protein.
Length = 596
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/36 (27%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 109 YVHLNLGWRPQR-HEDLQILQKRNRVDFWPPIHFSL 5
+++ NLG ++ H L+ +Q+ +++ WP HF +
Sbjct: 559 FIYENLGEMSEKLHGYLEEIQRLDKLRAWPKRHFPI 594
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,228,805
Number of Sequences: 27780
Number of extensions: 79476
Number of successful extensions: 315
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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