Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_C14
         (246 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   1.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   2.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   2.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   3.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   9.1  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +3

Query: 87  HPRFRWTYNMWRPRSRRDV*WWT 155
           HP     +N W P  R  +  WT
Sbjct: 466 HPYDHLVWNSWMPSIRGAIQQWT 488


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 2.2
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +3

Query: 102 WTYNMWRP 125
           W +N+WRP
Sbjct: 83  WLHNIWRP 90


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 2.2
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -3

Query: 163 HNLVHH*TSLRERGLHILYVHLNLGWRPQRHEDLQILQK 47
           H+ +HH   L ++  +++Y + +   R Q H + +IL++
Sbjct: 73  HHHLHHHQVLYQQSPYLMYENPDEEKRYQEHPNGKILRE 111


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 194 YHHVHMIDRCYDCG 235
           Y +VH    C DCG
Sbjct: 476 YEYVHDEYTCMDCG 489


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 19.0 bits (37), Expect = 9.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 136 LRERGLHILYVHLNLGW 86
           L  RGL  +++ LNLG+
Sbjct: 70  LPARGLTAVFLGLNLGF 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,056
Number of Sequences: 438
Number of extensions: 942
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4275738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)