Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_C13
         (302 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   125   2e-30
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   124   2e-30
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    28   0.35 
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    25   1.8  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    25   1.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   4.3  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    24   5.6  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    24   5.6  
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ...    23   7.5  
SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme...    23   7.5  
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    23   9.9  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    23   9.9  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    23   9.9  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    23   9.9  
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    23   9.9  
SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    23   9.9  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  125 bits (301), Expect = 2e-30
 Identities = 59/98 (60%), Positives = 71/98 (72%)
 Frame = +3

Query: 9   DRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVS 188
           DRLQTGMR AFGKP G VARV IGQ +MSVR+ D  +A  IEALRR ++KFPG+Q+I VS
Sbjct: 109 DRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVS 168

Query: 189 KKWGFSTYEREEFEKLRDAGRIANDGCNVKYRPEHGPL 302
           KKWGFS Y R+E+ + R  G I  DGC  K+  + G L
Sbjct: 169 KKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  124 bits (300), Expect = 2e-30
 Identities = 59/98 (60%), Positives = 71/98 (72%)
 Frame = +3

Query: 9   DRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVS 188
           DRLQTGMR AFGKP G VARV IGQ +MSVR+ D  +A  IEALRR ++KFPG+Q+I VS
Sbjct: 109 DRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVS 168

Query: 189 KKWGFSTYEREEFEKLRDAGRIANDGCNVKYRPEHGPL 302
           KKWGFS Y R+E+ + R  G I  DGC  K+  + G L
Sbjct: 169 KKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206


>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 27.9 bits (59), Expect = 0.35
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +3

Query: 18  QTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSK 191
           +T M    G  +   AR+ IG+ +  +      K     AL++A F  PG+ +I V +
Sbjct: 124 ETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKELAEHALKQAAFHLPGKYEIIVKQ 181


>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 58 VPWGFPNAPRIPV 20
          + W FPNAP IPV
Sbjct: 46 IKWIFPNAPSIPV 58


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 195 WGFSTYEREEFEKLRDAGRIANDGC 269
           W +   E  + E LR++ RI+N GC
Sbjct: 679 WQYGLPELNDREALRNSKRISNPGC 703


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 179  DLLATRELELSTTQSLNDLCLPTVT*AYRHNGLSNTHT-RYCALGFPE 39
            DL+A R+   S  +S+N + LP V+ A +    SNT++  Y   G+ E
Sbjct: 2766 DLIAWRQ---SVFKSINKVFLPLVSIAQQSTNKSNTNSVSYLYRGYHE 2810


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 68  TRYCALGFPERTTHPSLEPIP 6
           T +    +P+R T PSL+ +P
Sbjct: 226 THFAPYYYPQRATSPSLKQVP 246


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = +1

Query: 217 VRNLRSYVMLDVLLTMDATSSTAQSMDP 300
           V +LRS+++ + L+++ ++SST   + P
Sbjct: 176 VASLRSHILFNALISILSSSSTLHKLYP 203


>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 301 RGPCSGRYLTLHPSLAIRP 245
           RGPC  RYL+      +RP
Sbjct: 15  RGPCVFRYLSTLEGTTVRP 33


>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
           Spe2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 156 KFPGRQKIYVSKKWGFSTYEREEF 227
           K   ++K + +K   FS+Y+REEF
Sbjct: 337 KGASQEKHFSAKLKSFSSYKREEF 360


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 13  GSRLGCVVRSGNPKAQ*RVCVLDSPLCLYAQVTVGRH 123
           G+R+G  +    P      CV  S L L   +  GRH
Sbjct: 10  GARMGTGMMGDQPLVDNSECVYISSLALLKMLRHGRH 46


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 171 QKIYVSKKWGFSTYEREEFEKLRDAG 248
           +K+ + K +  S    +EF KLRD G
Sbjct: 330 RKVLLKKGYAKSDASDKEFNKLRDKG 355


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -3

Query: 216 VRTWKSPTS*IH 181
           VRTWK+P++ +H
Sbjct: 190 VRTWKNPSASVH 201


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 207 TYEREEFEKLRDAGRIANDGCNVKY 281
           T +R+  ++L D  +   D CNV+Y
Sbjct: 146 TNQRDHLDRLCDQVKFYLDQCNVEY 170


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 20  DWDAWCVRETPRHSSACAY 76
           ++D WCVR     S++C +
Sbjct: 169 EFDRWCVRRFSPASNSCCH 187


>SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -1

Query: 200 APLLRYIDLLATRELELSTTQSLNDLCLPTVT*AYRHNGLSNTHTRYCALGFPERTTHPS 21
           +PLL  I  L  R  + S ++ LN +         +  GLS+ H+RY +   P R    +
Sbjct: 92  SPLLSPISPLKLRFHKYSVSKQLNSV-------GKQGFGLSSNHSRYASPSSPARLARGA 144

Query: 20  L 18
           L
Sbjct: 145 L 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,306,073
Number of Sequences: 5004
Number of extensions: 23076
Number of successful extensions: 53
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)