Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_C13
(302 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 128 1e-30
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 126 4e-30
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 121 1e-28
06_01_0499 - 3581145-3582425 31 0.23
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 1.2
09_06_0319 - 22293869-22293906,22294539-22295808 27 2.1
08_02_0567 + 18769742-18769790,18769928-18771351 27 2.1
03_05_0874 - 28429982-28430083,28430284-28430472,28430585-284306... 27 2.8
09_06_0088 + 20774901-20775491,20776172-20776687 26 4.9
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 26 4.9
01_01_0639 + 4825703-4826155,4826344-4826559,4826683-4827411 26 6.5
11_01_0053 - 401578-401824,401996-402079,402201-402388,402713-40... 25 8.6
02_01_0759 - 5628913-5630870,5631023-5631047 25 8.6
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 128 bits (308), Expect = 1e-30
Identities = 60/96 (62%), Positives = 70/96 (72%)
Frame = +3
Query: 9 DRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVS 188
DRLQTGMRGAFGKP GT ARVRIGQ ++SVR D A EALRRAKFKFPGRQ++ S
Sbjct: 416 DRLQTGMRGAFGKPTGTCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFPGRQRVIFS 475
Query: 189 KKWGFSTYEREEFEKLRDAGRIANDGCNVKYRPEHG 296
KWGF+ ++R+E+ KL+ GRI DG N K HG
Sbjct: 476 AKWGFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRHG 511
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 126 bits (303), Expect = 4e-30
Identities = 61/98 (62%), Positives = 71/98 (72%)
Frame = +3
Query: 9 DRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVS 188
DRLQTGMRGAFGKPQGT ARV IGQ ++SVR + EALRRAKFKFPGRQKI S
Sbjct: 109 DRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHS 168
Query: 189 KKWGFSTYEREEFEKLRDAGRIANDGCNVKYRPEHGPL 302
+KWGF+ + REE+ KL+ GRI +DG N + HG L
Sbjct: 169 RKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 121 bits (291), Expect = 1e-28
Identities = 57/90 (63%), Positives = 66/90 (73%)
Frame = +3
Query: 9 DRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVS 188
DRLQTGMRGAFGKPQGT ARV IGQ ++SVR EALRRAKFKFPGRQKI S
Sbjct: 105 DRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIES 164
Query: 189 KKWGFSTYEREEFEKLRDAGRIANDGCNVK 278
+KWGF+ + R+E+ +L+ GRI DG N K
Sbjct: 165 RKWGFTKFSRDEYVRLKSEGRIMPDGVNAK 194
>06_01_0499 - 3581145-3582425
Length = 426
Score = 30.7 bits (66), Expect = 0.23
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 255 QYVQHHVASQIPHVRTWKSPTS*IHRSSGDQG 160
+Y H A+++ HVR W SPTS + D G
Sbjct: 112 RYPGHGAAAELAHVRAWWSPTSHAAAADWDDG 143
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 42 GKPQGTVARVRIGQPIMSVRSSD 110
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>09_06_0319 - 22293869-22293906,22294539-22295808
Length = 435
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 42 GKPQGTVARVRIGQPIMSVRSSD 110
G PQ T+ R+ +G P +S+ S D
Sbjct: 343 GTPQPTLERLHVGHPTLSLHSDD 365
>08_02_0567 + 18769742-18769790,18769928-18771351
Length = 490
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +3
Query: 27 MRGAFGKPQG--TVARVRIGQPIMSVRSSDRW-KAQVIEALRRAKFKFPGRQKI 179
MR G+ G A +RI + I + ++++ +AQV+EA RR F+ PGR ++
Sbjct: 24 MRTNGGEQMGGSEAAHIRIDEIIRRLDAAEKEAQAQVVEA-RREIFRVPGRHRL 76
>03_05_0874 -
28429982-28430083,28430284-28430472,28430585-28430655,
28430754-28431021,28432579-28432818,28433791-28433979
Length = 352
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 153 FKFPGRQKIYVSKKWGFSTYEREEFEKLRDA 245
FK G+QKIY++++ F+ EE E+++ A
Sbjct: 182 FKEYGKQKIYLARQDQFNIPNGEELEEMKKA 212
>09_06_0088 + 20774901-20775491,20776172-20776687
Length = 368
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -2
Query: 151 LARRRASMT---CAFQRSLERTDIMGCPIRTRATVPWGFPNAPR 29
L R +S+T C+ ++ T+++GCP+R V G P + R
Sbjct: 207 LELRESSITPIHCSDEQLAAVTEVLGCPVRLLPIVYLGLPLSVR 250
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 26.2 bits (55), Expect = 4.9
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -2
Query: 88 MGCPIRTRATVPWGFPNAPRIPVWS 14
+ CP+ + + VP P++P P++S
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYS 1649
>01_01_0639 + 4825703-4826155,4826344-4826559,4826683-4827411
Length = 465
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +3
Query: 42 GKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGR-QKIYVSKKWGFSTYER 218
G+P+ + VR P++ +++ W A + + + PG +I F Y+
Sbjct: 267 GRPKSRSSSVRTSPPVVDAGAAEEWYANSVSSPLLPFHQLPGAPPRISAPSARHFPEYDW 326
Query: 219 EEFEKLRDA 245
EK R A
Sbjct: 327 CPLEKPRPA 335
>11_01_0053 -
401578-401824,401996-402079,402201-402388,402713-402779,
402905-403105,403712-403789,404358-404374
Length = 293
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 171 QKIYVSKKWGFSTYEREEFEKLRD 242
+KIY S WGF+ E+E + D
Sbjct: 2 EKIYRSHLWGFTANEKEAYSGEND 25
>02_01_0759 - 5628913-5630870,5631023-5631047
Length = 660
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -2
Query: 109 SLERTDIMGCPIRT---RATVPWGFPNAPRIPVWSLS 8
SLER DI CP+ T A V G PN + V S S
Sbjct: 233 SLERLDITRCPLITDKGLAAVAHGCPNLLSLTVESCS 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,079,554
Number of Sequences: 37544
Number of extensions: 170564
Number of successful extensions: 458
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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