Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_C11
         (132 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...    23   4.2  
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...    23   4.2  
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...    23   4.2  
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch...    23   5.5  

>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 103 MARTKQTARK 132
           MARTKQTARK
Sbjct: 1   MARTKQTARK 10


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 103 MARTKQTARK 132
           MARTKQTARK
Sbjct: 1   MARTKQTARK 10


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 103 MARTKQTARK 132
           MARTKQTARK
Sbjct: 1   MARTKQTARK 10


>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 131 LRAVCFVRAIIHFSELLKSINYIKIVLNLDL 39
           LR +C   AI  F ELL ++  I +++++ L
Sbjct: 138 LRCICACEAISDFEELLGNMR-IGLIIDISL 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 502,558
Number of Sequences: 5004
Number of extensions: 5710
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 24
effective length of database: 2,242,382
effective search space used: 42605258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)