Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_C11
         (132 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   0.78 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   0.78 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   1.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   3.1  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    20   3.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    18   9.6  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 0.78
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 45  GFINKFRNNVHND 7
           G  NKF NNV+ D
Sbjct: 302 GSYNKFNNNVYKD 314


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 0.78
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 45  GFINKFRNNVHND 7
           G  NKF NNV+ D
Sbjct: 355 GSYNKFNNNVYKD 367


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 89  ELLKSINYIKIV 54
           ELLK  NY+K++
Sbjct: 160 ELLKHFNYMKVI 171


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 130 YGLFALYVPLF 98
           YG++  +VPLF
Sbjct: 220 YGIWVYFVPLF 230


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 130 YGLFALYVPLF 98
           YG++  +VPLF
Sbjct: 96  YGIWVYFVPLF 106


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -2

Query: 101 IHFSELLKSINY 66
           +HF+ ++K IN+
Sbjct: 1   MHFNNVIKYINF 12


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,836
Number of Sequences: 438
Number of extensions: 460
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 24
effective length of database: 135,831
effective search space used:  2580789
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)