Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_C09
         (181 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    24   2.3  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    24   3.1  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   7.1  

>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 145 F*ARFEHSNLFKVKLSAHLDTHRRAPR*DFD 53
           F A  +   L +  LS H+ TH  AP   FD
Sbjct: 143 FEAGIDSPLLCQASLSTHVKTHNNAPLTSFD 173


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 171 SMHEIFKQHFEPALSTLIC 115
           S+ E+FK+   P LS L C
Sbjct: 365 SLEELFKERVTPILSQLTC 383


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 21  SVSRRLNAGSI--SKSYRGALR*VSRWADNFTLNKLECSKRAQN 146
           S  ++L+ G I  +  YRG L+ +  W D   L  L    R++N
Sbjct: 263 SCFKQLSEGLIFDTPGYRGNLKSLLPWVDTKLLTSLVPKTRSRN 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 720,027
Number of Sequences: 5004
Number of extensions: 10490
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)