Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_C09
(181 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54342-1|CAA91143.1| 505|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z70284-13|CAB54280.1| 639|Caenorhabditis elegans Hypothetical p... 25 5.4
Z70284-12|CAB54278.1| 549|Caenorhabditis elegans Hypothetical p... 25 5.4
Z70284-11|CAA94281.1| 612|Caenorhabditis elegans Hypothetical p... 25 5.4
Z69636-2|CAA93463.3| 247|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z82264-5|CAB05156.1| 404|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z12017-7|CAH19088.1| 856|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z12017-6|CAE47469.1| 734|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z12017-5|CAA78052.2| 859|Caenorhabditis elegans Hypothetical pr... 25 7.1
U50068-5|AAB37734.1| 722|Caenorhabditis elegans Temporarily ass... 25 7.1
AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical ... 25 7.1
>Z54342-1|CAA91143.1| 505|Caenorhabditis elegans Hypothetical
protein C08H9.1 protein.
Length = 505
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 93 WADNFTLNKLECSKRAQNAA*IFRAWNNR 179
WAD+ L+K K QNA I RAW +R
Sbjct: 343 WADD-ALHKYLNLKEVQNALGIDRAWKDR 370
>Z70284-13|CAB54280.1| 639|Caenorhabditis elegans Hypothetical
protein K07F5.13c protein.
Length = 639
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 93 TSTLTEEHRDRILILNRRLTAGSPTILV 10
T+ TEE RD+IL + + + G P + V
Sbjct: 339 TNLNTEERRDKILEIIKAILGGGPNVEV 366
>Z70284-12|CAB54278.1| 549|Caenorhabditis elegans Hypothetical
protein K07F5.13b protein.
Length = 549
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 93 TSTLTEEHRDRILILNRRLTAGSPTILV 10
T+ TEE RD+IL + + + G P + V
Sbjct: 249 TNLNTEERRDKILEIIKAILGGGPNVEV 276
>Z70284-11|CAA94281.1| 612|Caenorhabditis elegans Hypothetical
protein K07F5.13a protein.
Length = 612
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 93 TSTLTEEHRDRILILNRRLTAGSPTILV 10
T+ TEE RD+IL + + + G P + V
Sbjct: 312 TNLNTEERRDKILEIIKAILGGGPNVEV 339
>Z69636-2|CAA93463.3| 247|Caenorhabditis elegans Hypothetical
protein F20B10.3 protein.
Length = 247
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 159 IFKQHFEPALSTLICSK*NCRPTSTLT 79
+F+ P + CS NC+PT TL+
Sbjct: 40 VFQSEQPPQVQQTPCSTGNCQPTPTLS 66
>Z82264-5|CAB05156.1| 404|Caenorhabditis elegans Hypothetical
protein C49C3.11 protein.
Length = 404
Score = 25.0 bits (52), Expect = 7.1
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +3
Query: 9 ARGSSVSRRLNAGSISKSYRGALR*VSRWADNFTLNKLECSKRAQ 143
A+ S + G I + GA R + W D LNK ECSK Q
Sbjct: 256 AKASFAEEGIQTGGI---WVGAYRRKACW-DKKNLNKTECSKELQ 296
>Z12017-7|CAH19088.1| 856|Caenorhabditis elegans Hypothetical
protein R08D7.6c protein.
Length = 856
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 8 GTRIVGEPA-VKRRFNIKILSRCSSVSVEVGRQF 106
G IVG+ A R NI+ +SRC + E+ QF
Sbjct: 225 GYGIVGKVASTMRTMNIRDVSRCPFFNEEIDEQF 258
>Z12017-6|CAE47469.1| 734|Caenorhabditis elegans Hypothetical
protein R08D7.6b protein.
Length = 734
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 8 GTRIVGEPA-VKRRFNIKILSRCSSVSVEVGRQF 106
G IVG+ A R NI+ +SRC + E+ QF
Sbjct: 228 GYGIVGKVASTMRTMNIRDVSRCPFFNEEIDEQF 261
>Z12017-5|CAA78052.2| 859|Caenorhabditis elegans Hypothetical
protein R08D7.6a protein.
Length = 859
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 8 GTRIVGEPA-VKRRFNIKILSRCSSVSVEVGRQF 106
G IVG+ A R NI+ +SRC + E+ QF
Sbjct: 228 GYGIVGKVASTMRTMNIRDVSRCPFFNEEIDEQF 261
>U50068-5|AAB37734.1| 722|Caenorhabditis elegans Temporarily
assigned gene nameprotein 292 protein.
Length = 722
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 26 EPAVKRRFNIKILSRCSSVSVEVGRQFYFE 115
EP V + + + R SV+VE+G+ F F+
Sbjct: 16 EPTVDSKATRENMLRQPSVTVEIGKHFVFD 45
>AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical
protein Y39A3A.1 protein.
Length = 311
Score = 25.0 bits (52), Expect = 7.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 106 KLSAHLDTHRRAPR*DFDIEPAFNRRLTDDPRA 8
K + LD R+ R DI+ +R L DDPR+
Sbjct: 24 KKNYDLDDKPRSGRPRLDIDEDISRALEDDPRS 56
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,175,953
Number of Sequences: 27780
Number of extensions: 64305
Number of successful extensions: 102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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