Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_C09
(181 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 20 2.4
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 20 3.1
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 20 3.1
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot... 19 4.1
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 19 5.5
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 19 7.2
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 19 7.2
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 19 7.2
AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protei... 19 7.2
AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective... 19 7.2
DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protei... 18 9.6
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 18 9.6
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 18 9.6
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 20.2 bits (40), Expect = 2.4
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -2
Query: 174 YSMHEIFKQHFEPA 133
Y MH+I K+ PA
Sbjct: 264 YEMHQISKKKLSPA 277
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 19.8 bits (39), Expect = 3.1
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = +2
Query: 14 RIVGEPAVKRRFN--IKILSRCSSV 82
+I+ EP VK F +++++R SV
Sbjct: 685 KILAEPLVKEHFKKALELMNRAVSV 709
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 19.8 bits (39), Expect = 3.1
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 85 CRGGPTIL 108
C GGPTIL
Sbjct: 370 CGGGPTIL 377
>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage
protein protein.
Length = 1010
Score = 19.4 bits (38), Expect = 4.1
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = +1
Query: 49 QYQNPIAVLF 78
QY+NPI V++
Sbjct: 67 QYKNPIIVMY 76
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 19.0 bits (37), Expect = 5.5
Identities = 8/27 (29%), Positives = 13/27 (48%)
Frame = -1
Query: 130 EHSNLFKVKLSAHLDTHRRAPR*DFDI 50
E N+F K H+D + + DF +
Sbjct: 195 EEVNIFLDKKGFHMDGYTNNSKWDFKV 221
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 18.6 bits (36), Expect = 7.2
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3
Query: 35 PPAHRRSSCRI 3
PPA +SSC I
Sbjct: 145 PPAIYKSSCEI 155
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 18.6 bits (36), Expect = 7.2
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3
Query: 35 PPAHRRSSCRI 3
PPA +SSC I
Sbjct: 141 PPAIYKSSCEI 151
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 18.6 bits (36), Expect = 7.2
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3
Query: 35 PPAHRRSSCRI 3
PPA +SSC I
Sbjct: 150 PPAIYKSSCEI 160
>AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protein
kinase foraging protein.
Length = 678
Score = 18.6 bits (36), Expect = 7.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 84 LTEEHRDRILILNRRLTAGSPTI 16
LT+ RDR L ++ +AGS I
Sbjct: 108 LTQIRRDRGLHVSCSFSAGSTII 130
>AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective
protein-1 protein.
Length = 128
Score = 18.6 bits (36), Expect = 7.2
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +1
Query: 64 IAVLFGECRGGPTI 105
I LF +C G P+I
Sbjct: 15 IVFLFDKCSGYPSI 28
>DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protein
protein.
Length = 424
Score = 18.2 bits (35), Expect = 9.6
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +2
Query: 98 RQFYFEQIRVLKA 136
RQFYF I L A
Sbjct: 2 RQFYFSAILFLLA 14
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 18.2 bits (35), Expect = 9.6
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3
Query: 35 PPAHRRSSCRI 3
PPA +SSC I
Sbjct: 145 PPAVYKSSCSI 155
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 18.2 bits (35), Expect = 9.6
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3
Query: 35 PPAHRRSSCRI 3
PPA +SSC I
Sbjct: 137 PPAIFKSSCEI 147
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,068
Number of Sequences: 438
Number of extensions: 754
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 39
effective length of database: 129,261
effective search space used: 2585220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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