Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_C08
(316 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 173 4e-45
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 173 4e-45
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 151 3e-38
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 151 3e-38
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 151 3e-38
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 91 3e-20
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 42 2e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 41 5e-05
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 39 2e-04
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 27 0.67
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 0.89
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 25 3.6
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 24 4.7
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 24 4.7
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 24 6.3
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 24 6.3
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 24 6.3
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 23 8.3
SPAC9E9.01 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 23 8.3
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 23 8.3
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 173 bits (422), Expect = 4e-45
Identities = 83/93 (89%), Positives = 88/93 (94%)
Frame = +1
Query: 37 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 216
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 217 FQKESTLHLVLRLRGGTIEPSLRIWAMKYSCEK 315
QKESTLHLVLRLRGG IEPSL+ A KY+CEK
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEK 93
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 173 bits (422), Expect = 4e-45
Identities = 83/93 (89%), Positives = 88/93 (94%)
Frame = +1
Query: 37 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 216
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 217 FQKESTLHLVLRLRGGTIEPSLRIWAMKYSCEK 315
QKESTLHLVLRLRGG IEPSL+ A KY+CEK
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEK 93
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 151 bits (365), Expect = 3e-38
Identities = 72/76 (94%), Positives = 75/76 (98%)
Frame = +1
Query: 37 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 216
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 217 FQKESTLHLVLRLRGG 264
QKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 151 bits (365), Expect = 3e-38
Identities = 72/76 (94%), Positives = 75/76 (98%)
Frame = +1
Query: 37 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 216
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 217 FQKESTLHLVLRLRGG 264
QKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 151 bits (365), Expect = 3e-38
Identities = 72/76 (94%), Positives = 75/76 (98%)
Frame = +1
Query: 37 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 216
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 217 FQKESTLHLVLRLRGG 264
QKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 151 bits (365), Expect = 3e-38
Identities = 72/76 (94%), Positives = 75/76 (98%)
Frame = +1
Query: 37 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 216
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 217 FQKESTLHLVLRLRGG 264
QKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 151 bits (365), Expect = 3e-38
Identities = 72/76 (94%), Positives = 75/76 (98%)
Frame = +1
Query: 37 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 216
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 217 FQKESTLHLVLRLRGG 264
QKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 151 bits (365), Expect = 3e-38
Identities = 72/76 (94%), Positives = 75/76 (98%)
Frame = +1
Query: 37 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 216
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 217 FQKESTLHLVLRLRGG 264
QKESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 151 bits (365), Expect = 3e-38
Identities = 72/76 (94%), Positives = 75/76 (98%)
Frame = +1
Query: 37 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 216
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 217 FQKESTLHLVLRLRGG 264
QKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 91.5 bits (217), Expect = 3e-20
Identities = 40/77 (51%), Positives = 56/77 (72%)
Frame = +1
Query: 37 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 216
M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 217 FQKESTLHLVLRLRGGT 267
+ S LHLVL LRGG+
Sbjct: 61 LEGGSVLHLVLALRGGS 77
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 42.3 bits (95), Expect = 2e-05
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +1
Query: 67 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNFQKES-TLHL 243
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YN +++ + +
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQDFIVCM 71
Query: 244 VLRLRGGTIEP 276
V R + T P
Sbjct: 72 VSRPKTSTSTP 82
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 40.7 bits (91), Expect = 5e-05
Identities = 20/73 (27%), Positives = 38/73 (52%)
Frame = +1
Query: 37 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 216
+ + +K + + V++ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 217 FQKESTLHLVLRL 255
Q ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 39.1 bits (87), Expect = 2e-04
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +1
Query: 64 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNFQKESTL 237
GK LE+E ++T +K ++ +PP++Q++I G QL+D L + +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 27.1 bits (57), Expect = 0.67
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 152 INSDSSLPASNWKMAVHCLTTTFK 223
I LP+ +K A+HC TT F+
Sbjct: 137 IKQRMQLPSRKYKSALHCATTVFR 160
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.6 bits (56), Expect = 0.89
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +1
Query: 40 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 213
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 214 NFQKESTLHLVLRLRGGT 267
+ T HLV+ + T
Sbjct: 65 DATDLVTFHLVIAVFNST 82
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 3.6
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = +1
Query: 58 LTGKTITLEVEASDTIENVKAKIQDKEGIP---PDQQRLIFAGKQLEDGRTLSDYNFQKE 228
L G T EV T+ + + +G P P + I A +G TL+ YN
Sbjct: 94 LKGPERTSEVSLPQTVNLSEISNNNDKGQPTNTPPVRSTIVAPSLYSEGSTLNHYNNGSH 153
Query: 229 STLH 240
LH
Sbjct: 154 QVLH 157
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 24.2 bits (50), Expect = 4.7
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -1
Query: 142 CPPYLGSSPLHFRSYLKP 89
CPP G L +RSY P
Sbjct: 1142 CPPLAGRDHLAYRSYYAP 1159
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 24.2 bits (50), Expect = 4.7
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +1
Query: 205 SDYNFQKESTLHLVLRLRGGTIEPSLRIWAMKYSCEK 315
+D F + T +++ +L I PS+ I + Y C +
Sbjct: 571 NDPLFTLDQTCNIIAKLADNLIHPSVPIGSSAYRCRR 607
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 23.8 bits (49), Expect = 6.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 170 LPASNWKMAVHCLTTTFK 223
+P NWK + TTTFK
Sbjct: 116 IPPDNWKCPLTINTTTFK 133
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 23.8 bits (49), Expect = 6.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 246 NQVKGGLFLKVVVRQCTAIFQLLAGK 169
N +K F + R C +FQ++AGK
Sbjct: 280 NLLKKAFFDHLFGRHCLLLFQVIAGK 305
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 23.8 bits (49), Expect = 6.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 190 DGRTLSDYNFQKESTLHLVLRLR 258
DG TL++ N HL++RL+
Sbjct: 432 DGETLNEINTNNPEREHLIVRLK 454
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 23.4 bits (48), Expect = 8.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 155 NSDSSLPASNWKMAVH 202
NSDS +P NWK + +
Sbjct: 86 NSDSRIPLVNWKTSTN 101
>SPAC9E9.01 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 99
Score = 23.4 bits (48), Expect = 8.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 19 HEGSVTMQIFVKTLTGKTITLEVEASDTIENV 114
H G+VT IFV GK+ L+ + + +V
Sbjct: 14 HTGTVTHTIFVYVFLGKSKRLKTFSDSNVGSV 45
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 23.4 bits (48), Expect = 8.3
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 149 QINSDSSLPASNWKMAVHCLTTTFKKSPP-FTWF*DLEE 262
+IN D+S ++ K+ +H L FKK+ TW D E+
Sbjct: 589 EINRDASGKVTSLKLELH-LDGDFKKTEKKVTWLADTED 626
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,423,887
Number of Sequences: 5004
Number of extensions: 28119
Number of successful extensions: 77
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -