Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_C06
         (142 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    24   3.2  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    23   5.5  
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    22   9.6  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    22   9.6  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    22   9.6  

>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 125 VVFSXKISAEYLLVLQHMLSWRPFHLMRF 39
           V+F+ + S   L ++ H++  RP+  +RF
Sbjct: 454 VLFNRQPSLHKLSIMAHLVKVRPWRTLRF 482


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 139 VSLLVLYSAXKSALSISWYFSIC 71
           VS+L   S  +S   +SW+ +IC
Sbjct: 178 VSVLFTSSVKRSPHGVSWFATIC 200


>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 110 KISAEYLLVLQHMLSWRPFHLMRF 39
           K ++EY + + H+ S+ PF +  F
Sbjct: 85  KAASEYKITVVHVPSYSPFAVSEF 108


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 95  YLLVLQHMLSWRPF 54
           Y L +Q  L+WRPF
Sbjct: 246 YDLFMQSKLTWRPF 259


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 38  KISLDERVSSSAYAEVPRDT 97
           K+  D R +SSA   +PRDT
Sbjct: 456 KLQHDVRSASSAALNLPRDT 475


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 547,182
Number of Sequences: 5004
Number of extensions: 6443
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 27
effective length of database: 2,227,370
effective search space used: 42320030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)