Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_C05
(346 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 28 1.7
02_04_0013 - 18910009-18910056,18910154-18910282,18910373-189104... 28 1.7
08_01_0401 - 3569545-3570003 27 3.0
01_06_1501 + 37804029-37804600,37804626-37805388 27 3.9
12_02_0405 - 18635503-18635871,18636703-18636817,18636970-186377... 27 5.2
01_01_0592 + 4414416-4415132 27 5.2
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302... 26 6.9
02_05_1200 - 34922073-34922273,34922397-34922469,34922976-349230... 26 6.9
12_02_0642 + 21454142-21454251,21454683-21454872,21454988-214550... 26 9.1
12_02_0633 + 21402847-21402862,21403143-21404975,21405052-214051... 26 9.1
08_01_0216 - 1717696-1718265,1718856-1720082,1720558-1720627,172... 26 9.1
05_03_0187 + 9413575-9414895,9415014-9415289,9415513-9415631,941... 26 9.1
05_03_0065 - 7953414-7953845,7953963-7954081,7954158-7955990,795... 26 9.1
01_06_0544 + 30118208-30118417,30118959-30119063,30119179-301192... 26 9.1
>08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 28.3 bits (60), Expect = 1.7
Identities = 20/67 (29%), Positives = 26/67 (38%)
Frame = +3
Query: 126 PLILYCKIWRSTPRISRRRSVNNLICNRQLKEHGELEQSTEGRLRLHGAAGLRVIQQSTG 305
P ILY I+ I RRR V I +++ E G L +IQ
Sbjct: 846 PCILYLSIFPVNHTIRRRRLVRRWIAEGYFRDNKESTAEENGEGSFSKLIDLSMIQAPRT 905
Query: 306 CVDRRKR 326
VD R+R
Sbjct: 906 RVDGRRR 912
>02_04_0013 -
18910009-18910056,18910154-18910282,18910373-18910420,
18910532-18910594,18910675-18910713,18912107-18912180,
18913014-18913072,18913265-18913324,18913466-18913590,
18914054-18914112,18914356-18914419,18914516-18914569,
18914727-18914765,18916135-18916275
Length = 333
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 220 NTESLNKALKEGSDSMVQQVSELSNSLQGALTDANGKAKEVL 345
N E+L KAL+EG + + ++ L S + L NG++K VL
Sbjct: 73 NFENLEKALEEGGE-LYEKTVYLFGSTEPQLLGVNGESKIVL 113
>08_01_0401 - 3569545-3570003
Length = 152
Score = 27.5 bits (58), Expect = 3.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2
Query: 201 RLNCSLIVFWKSW 163
R NC L+ FWK+W
Sbjct: 140 RRNCRLVAFWKAW 152
>01_06_1501 + 37804029-37804600,37804626-37805388
Length = 444
Score = 27.1 bits (57), Expect = 3.9
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 156 STPRISRRRSVNNLICNRQLKEHGEL-EQSTEGRLRLHGAAGLRVIQQSTGCVD 314
S R+ R + + R L HG++ ++T R R H A RV+ CVD
Sbjct: 112 SRTRVRRVLGHDGGVPPRLLARHGDVPRRATRPRRRRHPRAARRVVLLGCACVD 165
>12_02_0405 -
18635503-18635871,18636703-18636817,18636970-18637721,
18638540-18638542
Length = 412
Score = 26.6 bits (56), Expect = 5.2
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 105 ERWSGVTPLILYCKIWRSTPRISRRRSVNNLICNRQLKEHGELEQSTEGR 254
+RW V + +I R P+IS RR + L+C R E+E + R
Sbjct: 25 DRWGDVVLTDVLWEILRRLPQISGRRRL-RLVCRRWRDVVDEVEPEVQRR 73
>01_01_0592 + 4414416-4415132
Length = 238
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 16 GNFASNSHRLRHRHGRQVLRVVRLR 90
G+ A+ +HR R GR+ +R V +R
Sbjct: 154 GSLAAGAHRAASRRGRRAVRAVHVR 178
>09_04_0512 + 18226981-18227143,18227648-18229555,18229649-18230295,
18230710-18231949,18232085-18232419,18232500-18232577,
18232872-18232978,18233020-18233062
Length = 1506
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 183 SVNNLICNRQLKEHGELEQSTEGRLRLHGAAGLRVIQQ 296
S+ L C R + EH + + E + LHG+AGL Q
Sbjct: 1163 SIPELECFR-IDEHSSIAEENEYQGMLHGSAGLSYSHQ 1199
>02_05_1200 -
34922073-34922273,34922397-34922469,34922976-34923019,
34923107-34923183,34923433-34923529,34923668-34924062,
34926577-34926620,34926702-34926770,34926856-34926956,
34927689-34927856,34927940-34928141,34928269-34928708,
34928786-34928884,34929123-34929263
Length = 716
Score = 26.2 bits (55), Expect = 6.9
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -3
Query: 332 ALPFASVNAPCRLLDNSETC 273
ALP S++AP ++LDN ETC
Sbjct: 682 ALP-RSLDAPTQVLDNRETC 700
>12_02_0642 +
21454142-21454251,21454683-21454872,21454988-21455069,
21455224-21455802,21455854-21456909,21457133-21457251,
21457369-21457812
Length = 859
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 250 EGSDSMVQQVSELSNSLQGALT 315
E S SM Q+V +LSN +Q ALT
Sbjct: 288 EESASMTQRVIKLSNKVQTALT 309
>12_02_0633 +
21402847-21402862,21403143-21404975,21405052-21405170,
21405288-21405722
Length = 800
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 250 EGSDSMVQQVSELSNSLQGALT 315
E S SM Q+V +LSN +Q ALT
Sbjct: 166 EESASMTQRVIKLSNKVQTALT 187
>08_01_0216 -
1717696-1718265,1718856-1720082,1720558-1720627,
1721579-1721602,1722073-1722140
Length = 652
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +1
Query: 235 NKALKEGSDSMVQQVSEL 288
N+AL+EG D+M Q+V++L
Sbjct: 556 NQALREGMDNMKQRVADL 573
>05_03_0187 +
9413575-9414895,9415014-9415289,9415513-9415631,
9415749-9416192
Length = 719
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 250 EGSDSMVQQVSELSNSLQGALT 315
E S SM Q+V +LSN +Q ALT
Sbjct: 170 EESASMTQRVIKLSNKVQTALT 191
>05_03_0065 -
7953414-7953845,7953963-7954081,7954158-7955990,
7957103-7957559
Length = 946
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 250 EGSDSMVQQVSELSNSLQGALT 315
E S SM Q+V +LSN +Q ALT
Sbjct: 313 EESASMTQRVIKLSNKVQTALT 334
>01_06_0544 +
30118208-30118417,30118959-30119063,30119179-30119260,
30119415-30121250,30121327-30121445,30121563-30122006
Length = 931
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 250 EGSDSMVQQVSELSNSLQGALT 315
E S SM Q+V +LSN +Q ALT
Sbjct: 293 EESASMTQRVIKLSNKVQTALT 314
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,998,993
Number of Sequences: 37544
Number of extensions: 128171
Number of successful extensions: 438
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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