Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_C05
(346 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81560-8|CAN86623.1| 173|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z81560-7|CAB76737.2| 188|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z47357-11|CAA87428.3| 303|Caenorhabditis elegans Hypothetical p... 27 2.7
Z30662-12|CAA83142.3| 303|Caenorhabditis elegans Hypothetical p... 27 2.7
AL032643-2|CAA21661.2| 404|Caenorhabditis elegans Hypothetical ... 27 2.7
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 27 3.6
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 27 3.6
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 27 3.6
Z68215-2|CAA92451.2| 452|Caenorhabditis elegans Hypothetical pr... 26 6.3
Z68161-11|CAA92300.1| 347|Caenorhabditis elegans Hypothetical p... 26 8.3
Z68159-12|CAA92289.1| 347|Caenorhabditis elegans Hypothetical p... 26 8.3
>Z81560-8|CAN86623.1| 173|Caenorhabditis elegans Hypothetical
protein K02E2.8b protein.
Length = 173
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 257 PTPWCSRSPSYPTVYRVR*PTQTVKLRKC 343
PT WC+ S S+P ++R R P +T +C
Sbjct: 78 PTDWCAISGSFPIMFR-RYPEETTADAQC 105
>Z81560-7|CAB76737.2| 188|Caenorhabditis elegans Hypothetical
protein K02E2.8a protein.
Length = 188
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 257 PTPWCSRSPSYPTVYRVR*PTQTVKLRKC 343
PT WC+ S S+P ++R R P +T +C
Sbjct: 93 PTDWCAISGSFPIMFR-RYPEETTADAQC 120
>Z47357-11|CAA87428.3| 303|Caenorhabditis elegans Hypothetical
protein T16H12.9 protein.
Length = 303
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +3
Query: 114 SGVTPLILYCKIWRSTPRISRRRSVNNLICN 206
+G L C +WR P R + +N L+C+
Sbjct: 199 TGTVSLCSSCWVWRQLPSNYRPQYINELVCD 229
>Z30662-12|CAA83142.3| 303|Caenorhabditis elegans Hypothetical
protein T16H12.9 protein.
Length = 303
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +3
Query: 114 SGVTPLILYCKIWRSTPRISRRRSVNNLICN 206
+G L C +WR P R + +N L+C+
Sbjct: 199 TGTVSLCSSCWVWRQLPSNYRPQYINELVCD 229
>AL032643-2|CAA21661.2| 404|Caenorhabditis elegans Hypothetical
protein Y54E5A.3 protein.
Length = 404
Score = 27.5 bits (58), Expect = 2.7
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -2
Query: 213 VDDCRLNCSLIVFWKSWACFSRSC 142
V+D + N L + W W C S C
Sbjct: 78 VNDTKNNIQLFISWDDWGCCSACC 101
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -2
Query: 210 DDCRLNCSLIVF-WKSWACFSRSC 142
++C LN L +F W W+ S+SC
Sbjct: 1075 EECNLNSCLELFIWSDWSSCSKSC 1098
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -2
Query: 210 DDCRLNCSLIVF-WKSWACFSRSC 142
++C LN L +F W W+ S+SC
Sbjct: 1075 EECNLNSCLELFIWSDWSSCSKSC 1098
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -2
Query: 210 DDCRLNCSLIVF-WKSWACFSRSC 142
++C LN L +F W W+ S+SC
Sbjct: 1075 EECNLNSCLELFIWSDWSSCSKSC 1098
>Z68215-2|CAA92451.2| 452|Caenorhabditis elegans Hypothetical
protein C53B4.2 protein.
Length = 452
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 4 RGRPGNFASNSHRLRHRHGRQVLR 75
+G+ F S S + RH+HG V++
Sbjct: 30 KGKAKRFVSKSRQSRHKHGSSVVK 53
>Z68161-11|CAA92300.1| 347|Caenorhabditis elegans Hypothetical
protein F20C5.6 protein.
Length = 347
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 205 IVNSKNTESLNKALKEGSDSMVQQVSELSNSLQGALTDANGKAKEVL 345
I NS+ + + K + + ++SELS LQG L + G+A + +
Sbjct: 278 IQNSERSAEIQK-MHDALREKDLKISELSEKLQGLLINQEGEADDTM 323
>Z68159-12|CAA92289.1| 347|Caenorhabditis elegans Hypothetical
protein F20C5.6 protein.
Length = 347
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 205 IVNSKNTESLNKALKEGSDSMVQQVSELSNSLQGALTDANGKAKEVL 345
I NS+ + + K + + ++SELS LQG L + G+A + +
Sbjct: 278 IQNSERSAEIQK-MHDALREKDLKISELSEKLQGLLINQEGEADDTM 323
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,548,788
Number of Sequences: 27780
Number of extensions: 103938
Number of successful extensions: 327
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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