Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_C03
(202 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 1.0
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 1.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 1.4
SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces pom... 25 1.4
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 1.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 2.4
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 24 3.2
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 24 3.2
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 24 3.2
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 24 3.2
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 23 4.2
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 23 4.2
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 23 5.5
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 23 5.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 23 5.5
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 23 7.3
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce... 23 7.3
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 23 7.3
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 23 7.3
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 23 7.3
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 23 7.3
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 23 7.3
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo... 22 9.7
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces... 22 9.7
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 22 9.7
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 22 9.7
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 1.0
Identities = 13/55 (23%), Positives = 23/55 (41%)
Frame = -1
Query: 181 STDVPIMVSASEARSTPLPPPDTPKLCTKCEQNSTAMPTAITKLTSETAFRLIPP 17
S ++P + +A P PPP P N++ +P + + + IPP
Sbjct: 220 SPEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPP 274
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 1.0
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 12 TSGGISLNAVSLVNL-VMAVGI 74
T GGI LNA+ LVNL + VG+
Sbjct: 380 TPGGIPLNAILLVNLYTIIVGL 401
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = -1
Query: 187 PESTDVPIMVSASEARSTPLPPPDTPKLCTKCEQNSTAMPTAI 59
P P + S + + LPPP P K ++ ++P+A+
Sbjct: 152 PSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAV 194
>SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 236
Score = 25.0 bits (52), Expect = 1.4
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -1
Query: 163 MVSASEARSTPLPPPDTPKLCTKCEQNSTAMPTAITK--LTSETAFRLIPPLV 11
+ ++ E + PL P D C Q A+ +IT+ LT+ F+ + P V
Sbjct: 15 ITTSMEEKLVPLVPSDVKLRFLTCPQPGAAVIDSITEATLTAALVFQALTPSV 67
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.0 bits (52), Expect = 1.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 133 PLPPPDTPKLCTKCEQNSTAMPTAITKLTSETAFRLIPPLVP 8
P PPP P L K N+ + P ++ + ++T+ + P P
Sbjct: 905 PTPPPP-PPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFP 945
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 2.4
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 169 PIMVSASEARSTPLPPPDTPKLCTKCEQNSTAMPTAITKL-TSETAFRLIPPLVP 8
P+ +S+A PLP D P + +PT+ + S + PP VP
Sbjct: 1013 PVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVP 1067
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 23.8 bits (49), Expect = 3.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 169 PIMVSASEARSTPLPPPDTP 110
P + SA+ A ST PPP TP
Sbjct: 357 PRVFSANSAFSTTSPPPLTP 376
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 23.8 bits (49), Expect = 3.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 138 DRASEALTMMGTSVLSGITLT 200
DR++ A T+ GTS ++ +TLT
Sbjct: 855 DRSALASTVFGTSEVNALTLT 875
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 23.8 bits (49), Expect = 3.2
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -1
Query: 196 SVMPE--STDVPIMVSASEARSTPLPPPDTPKLCTKCEQNST 77
S PE T PI S+S TP PPP P T E +T
Sbjct: 221 STQPEFQQTTSPIFSSSS----TPPPPPPRPSQPTSGESQNT 258
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 23.8 bits (49), Expect = 3.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 124 PPDTPKLCTKCEQN 83
PP + KLC+ CE N
Sbjct: 174 PPPSGKLCSLCEDN 187
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 23.4 bits (48), Expect = 4.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 62 HHQVNERDGVQAYTPTRAEL 3
HH DG+ PTRAEL
Sbjct: 150 HHAYQGVDGMDTDLPTRAEL 169
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 23.4 bits (48), Expect = 4.2
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 124 PPDTPKLCTKCEQNSTAMPTAITKLTSETAF 32
PP + EQN+ AM T I K S AF
Sbjct: 335 PPTICMQLKRFEQNNFAMSTKIDKQVSYPAF 365
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 23.0 bits (47), Expect = 5.5
Identities = 7/13 (53%), Positives = 12/13 (92%)
Frame = -1
Query: 157 SASEARSTPLPPP 119
S +++++TPLPPP
Sbjct: 311 STNDSQTTPLPPP 323
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 23.0 bits (47), Expect = 5.5
Identities = 11/48 (22%), Positives = 21/48 (43%)
Frame = -1
Query: 184 ESTDVPIMVSASEARSTPLPPPDTPKLCTKCEQNSTAMPTAITKLTSE 41
E+T + + + P+PP PK + P+A+T ++E
Sbjct: 237 ENTKKAVKLETPLTSTPPIPPLSEPKHSPATVNEHISPPSALTNPSTE 284
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 23.0 bits (47), Expect = 5.5
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = -1
Query: 193 VMPESTDVPIMVSASEARSTPLPPPDTPKLCTKCEQNSTAMPTAITKLTSETAFRLIPP 17
++ EST S + + S+PLP T C +++ PT + S +PP
Sbjct: 87 IITESTSSTSSASTTGSSSSPLPSTST-----SCTTSTSIPPTGGSSSLSTPITPTVPP 140
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -1
Query: 184 ESTDVPIMVSASEARSTPLPPPDTPKL 104
ES D+ I + S P P+ PKL
Sbjct: 226 ESEDIQIAETPSNVTPKKKPSPEVPKL 252
>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 663
Score = 22.6 bits (46), Expect = 7.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 139 STPLPPPDTPKLCTKCEQNSTAMPTAITKLTSE 41
STP PP + +KC+ + + + I +LT E
Sbjct: 14 STP-PPEEASLYASKCDYYESDIYSQIRRLTEE 45
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -1
Query: 163 MVSASEARSTPLPPPDTPKLCTKCE 89
M+SA + +TP PP +P T +
Sbjct: 1 MLSAPSSSTTPASPPTSPPNTTSSD 25
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/27 (29%), Positives = 13/27 (48%)
Frame = -1
Query: 163 MVSASEARSTPLPPPDTPKLCTKCEQN 83
++ +AR L PP + C C Q+
Sbjct: 1157 LLGCDKAREFDLYPPSMQRYCDSCTQD 1183
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 22.6 bits (46), Expect = 7.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 181 STDVPIMVSASEARSTPLPPPDTPKLCTKCEQNSTAMPTAI 59
S D P+++ A E L PDT C++N ++ + I
Sbjct: 1273 SFDAPLVLEAIEKYKNALGAPDT--ATKSCKENLISLDSEI 1311
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 22.6 bits (46), Expect = 7.3
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = -1
Query: 136 TPLPPPDTPKLCTKCEQNSTAMPTAITKLTSETA 35
+P+P P+T E+ T PT K TA
Sbjct: 142 SPIPSPETIHKNIDVEEKETIEPTTPVKEVETTA 175
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 22.6 bits (46), Expect = 7.3
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +2
Query: 158 HHDGHVRALRHHAH 199
HH+GH HH H
Sbjct: 295 HHEGHHHHHHHHHH 308
>SPBC409.09c |mis13|cnl1|kinetochore protein
Mis13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 329
Score = 22.2 bits (45), Expect = 9.7
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -1
Query: 148 EARSTPLPPPDTPKL 104
+ + +PLPP D P+L
Sbjct: 233 DKQDSPLPPDDAPEL 247
>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 366
Score = 22.2 bits (45), Expect = 9.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 169 PIMVSASEARSTPLPPPDTPKLCTKC 92
P +VS S+ L P T +CT C
Sbjct: 285 PSLVSTVVKMSSKLHVPSTEAICTIC 310
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 22.2 bits (45), Expect = 9.7
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = -3
Query: 86 ELDRNADRHHQVNER 42
ELD+++D H ++N+R
Sbjct: 439 ELDKHSDWHFRINKR 453
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 22.2 bits (45), Expect = 9.7
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = -1
Query: 121 PDTPKLCTKCEQNSTAMPTAI 59
PD PKLC + + S ++ +
Sbjct: 401 PDIPKLCRRLTRGSASLEDVV 421
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 565,536
Number of Sequences: 5004
Number of extensions: 6669
Number of successful extensions: 51
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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