Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_C03
(202 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie... 52 6e-08
AL021482-2|CAA16339.1| 1003|Caenorhabditis elegans Hypothetical ... 44 1e-05
Z69884-4|CAA93751.2| 913|Caenorhabditis elegans Hypothetical pr... 42 6e-05
Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical pr... 41 1e-04
U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human nie... 41 1e-04
U23176-2|AAC46717.2| 667|Caenorhabditis elegans Patched family ... 41 1e-04
U28733-1|AAA68302.2| 982|Caenorhabditis elegans Patched related... 39 6e-04
AC006618-3|AAK68251.3| 960|Caenorhabditis elegans Patched relat... 36 0.004
AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil... 35 0.007
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil... 35 0.007
AL034393-26|CAI59121.1| 936|Caenorhabditis elegans Hypothetical... 34 0.012
Z79604-3|CAD36502.1| 817|Caenorhabditis elegans Hypothetical pr... 31 0.085
Z79604-2|CAB01900.1| 780|Caenorhabditis elegans Hypothetical pr... 31 0.085
AF332205-1|AAK17976.1| 817|Caenorhabditis elegans nuclear recep... 31 0.085
AF332204-1|AAK17975.1| 519|Caenorhabditis elegans nuclear recep... 31 0.085
AC024201-18|AAF36026.1| 430|Caenorhabditis elegans Hypothetical... 31 0.15
AL032639-4|CAA21636.2| 858|Caenorhabditis elegans Hypothetical ... 30 0.20
Z77134-2|CAB00873.1| 877|Caenorhabditis elegans Hypothetical pr... 30 0.26
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 28 0.79
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 28 0.79
Z66496-6|CAA91281.3| 191|Caenorhabditis elegans Hypothetical pr... 28 1.0
Z48585-12|CAI46589.1| 191|Caenorhabditis elegans Hypothetical p... 28 1.0
Z81082-2|CAE17818.1| 124|Caenorhabditis elegans Hypothetical pr... 27 2.4
AF043693-11|AAB97541.2| 213|Caenorhabditis elegans Hypothetical... 27 2.4
AF036703-5|AAY86288.1| 106|Caenorhabditis elegans Hypothetical ... 27 2.4
AC024794-7|AAK68501.3| 279|Caenorhabditis elegans Hypothetical ... 27 2.4
AC024793-6|AAF60688.1| 162|Caenorhabditis elegans Hypothetical ... 27 2.4
AC006762-2|AAF60558.2| 607|Caenorhabditis elegans Hypothetical ... 27 2.4
Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical pr... 26 3.2
Z11115-2|CAA77450.1| 599|Caenorhabditis elegans Hypothetical pr... 26 3.2
U23484-9|AAC46771.1| 304|Caenorhabditis elegans Hypothetical pr... 26 3.2
Z48585-1|CAA88486.1| 154|Caenorhabditis elegans Hypothetical pr... 26 4.2
U80955-5|AAG01559.2| 573|Caenorhabditis elegans Ferm domain (pr... 26 4.2
U80955-4|ABB51180.1| 589|Caenorhabditis elegans Ferm domain (pr... 26 4.2
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 25 5.6
AL021497-17|CAD56613.1| 138|Caenorhabditis elegans Hypothetical... 25 5.6
Z81520-4|CAE17808.1| 181|Caenorhabditis elegans Hypothetical pr... 25 7.4
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 25 7.4
L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell l... 25 7.4
AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein. 25 7.4
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 25 7.4
Z81544-3|CAB04435.1| 255|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical pr... 25 9.8
AL117195-28|CAB55014.1| 458|Caenorhabditis elegans Hypothetical... 25 9.8
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 25 9.8
AC024869-5|AAK68606.3| 1126|Caenorhabditis elegans Hypothetical ... 25 9.8
>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human niemann
pick c disease)related protein 2 protein.
Length = 1274
Score = 52.0 bits (119), Expect = 6e-08
Identities = 24/57 (42%), Positives = 36/57 (63%)
Frame = +3
Query: 21 GISLNAVSLVNLVMAVGIAVEFCSHLVHSFXXXXXXXXXDRASEALTMMGTSVLSGI 191
GI++N VS++N+ M++GIAVEF ++H F +RA AL G++ LSGI
Sbjct: 1130 GITVNVVSVINMAMSLGIAVEFFGQMLHGFYNSKKPKREERAFAALVSNGSTTLSGI 1186
>AL021482-2|CAA16339.1| 1003|Caenorhabditis elegans Hypothetical
protein Y39A1B.2 protein.
Length = 1003
Score = 44.0 bits (99), Expect = 1e-05
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +3
Query: 6 FGTSGGISLNAVSLVNLVMAVGIAVEFCSHLVHSFXXXXXXXXXDRASEALTMMGTSVLS 185
F T + L+ +S+V +VM++G V+F +HL ++F +R AL +G +L
Sbjct: 750 FMTFWSVRLDFISMVTIVMSIGFCVDFAAHLAYNFAKGQNMDGSERMRNALYAVGAPILM 809
Query: 186 GITLT 200
T T
Sbjct: 810 SATST 814
>Z69884-4|CAA93751.2| 913|Caenorhabditis elegans Hypothetical
protein F31F6.5 protein.
Length = 913
Score = 41.9 bits (94), Expect = 6e-05
Identities = 18/63 (28%), Positives = 37/63 (58%)
Frame = +3
Query: 12 TSGGISLNAVSLVNLVMAVGIAVEFCSHLVHSFXXXXXXXXXDRASEALTMMGTSVLSGI 191
T G++L+AVS+++++M++G AV+ +H++++F R AL +G + G
Sbjct: 794 TLWGVNLDAVSMISIIMSIGFAVDLSAHIIYAF-VTSHGDTKQRVIGALETLGWPIFQGA 852
Query: 192 TLT 200
+ T
Sbjct: 853 SST 855
>Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical protein
ZK675.1 protein.
Length = 1405
Score = 40.7 bits (91), Expect = 1e-04
Identities = 24/56 (42%), Positives = 29/56 (51%)
Frame = +3
Query: 21 GISLNAVSLVNLVMAVGIAVEFCSHLVHSFXXXXXXXXXDRASEALTMMGTSVLSG 188
GI LN VS V L+ AVGI VEF H+V SF R S A+ + V+ G
Sbjct: 1227 GIKLNPVSAVTLITAVGIGVEFTVHVVVSF-LTALGTRSQRTSSAVDRVFVPVIHG 1281
>U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human niemann
pick c disease)related protein 1 protein.
Length = 1383
Score = 40.7 bits (91), Expect = 1e-04
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +3
Query: 24 ISLNAVSLVNLVMAVGIAVEFCSHLVHSFXXXXXXXXXDRASEALTMMGTSVLSGITLT 200
I +NA+S NLVM+ GI +EF +++ + DRA + +G +LSG +T
Sbjct: 1179 IPVNALSATNLVMSSGILIEFSVNVLKGYACSLRQRAKDRAESTVGSIGPIILSGPVVT 1237
>U23176-2|AAC46717.2| 667|Caenorhabditis elegans Patched family
protein 2 protein.
Length = 667
Score = 40.7 bits (91), Expect = 1e-04
Identities = 24/56 (42%), Positives = 29/56 (51%)
Frame = +3
Query: 21 GISLNAVSLVNLVMAVGIAVEFCSHLVHSFXXXXXXXXXDRASEALTMMGTSVLSG 188
GI LN VS V L+ AVGI VEF H+V SF R S A+ + V+ G
Sbjct: 598 GIKLNPVSAVTLITAVGIGVEFTVHVVVSF-LTALGTRSQRTSSAVDRVFVPVIHG 652
>U28733-1|AAA68302.2| 982|Caenorhabditis elegans Patched related
family protein 6 protein.
Length = 982
Score = 38.7 bits (86), Expect = 6e-04
Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 24 ISLNAVSLVNLVMAVGIAVEFCSHLVHSF-XXXXXXXXXDRASEALTMMGTSVLSG 188
+ L+ +S++ ++M++G ++EF +H+ H F DR +A+ + V+ G
Sbjct: 840 VKLDPISMITIIMSIGFSIEFSAHITHGFVSNDSNLSAFDRCVDAMEKLAWPVVHG 895
>AC006618-3|AAK68251.3| 960|Caenorhabditis elegans Patched related
family protein 4 protein.
Length = 960
Score = 35.9 bits (79), Expect = 0.004
Identities = 15/60 (25%), Positives = 32/60 (53%)
Frame = +3
Query: 21 GISLNAVSLVNLVMAVGIAVEFCSHLVHSFXXXXXXXXXDRASEALTMMGTSVLSGITLT 200
G L++VS+ +VMA+G+AV++ H+ + + ++ ++ L +G V + T
Sbjct: 833 GSDLDSVSMGCIVMAIGLAVDYSVHICYRYHRSEYKTAQEKVADTLASVGWPVTQAVCST 892
>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
protein 3, isoform b protein.
Length = 1361
Score = 35.1 bits (77), Expect = 0.007
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +3
Query: 21 GISLNAVSLVNLVMAVGIAVEFCSHLVHSF 110
GI +N +S V L+ AVGI VEF +H+ +F
Sbjct: 1185 GIKMNPISAVTLICAVGIGVEFTAHVELAF 1214
>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
protein 3, isoform a protein.
Length = 1358
Score = 35.1 bits (77), Expect = 0.007
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +3
Query: 21 GISLNAVSLVNLVMAVGIAVEFCSHLVHSF 110
GI +N +S V L+ AVGI VEF +H+ +F
Sbjct: 1182 GIKMNPISAVTLICAVGIGVEFTAHVELAF 1211
>AL034393-26|CAI59121.1| 936|Caenorhabditis elegans Hypothetical
protein Y18D10A.7c protein.
Length = 936
Score = 34.3 bits (75), Expect = 0.012
Identities = 11/30 (36%), Positives = 24/30 (80%)
Frame = +3
Query: 21 GISLNAVSLVNLVMAVGIAVEFCSHLVHSF 110
G+SL+A S++ + M+VG +V+F +H+ +++
Sbjct: 810 GVSLDATSMITVAMSVGFSVDFAAHVSYAY 839
>Z79604-3|CAD36502.1| 817|Caenorhabditis elegans Hypothetical
protein ZK662.3b protein.
Length = 817
Score = 31.5 bits (68), Expect = 0.085
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 190 MPESTDVPIMVSASEARSTPLPPPDTP 110
MP +VPI + A STPLPPP P
Sbjct: 415 MPTPINVPITTPIAGALSTPLPPPIVP 441
>Z79604-2|CAB01900.1| 780|Caenorhabditis elegans Hypothetical
protein ZK662.3a protein.
Length = 780
Score = 31.5 bits (68), Expect = 0.085
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 190 MPESTDVPIMVSASEARSTPLPPPDTP 110
MP +VPI + A STPLPPP P
Sbjct: 378 MPTPINVPITTPIAGALSTPLPPPIVP 404
>AF332205-1|AAK17976.1| 817|Caenorhabditis elegans nuclear receptor
NHR-48 protein.
Length = 817
Score = 31.5 bits (68), Expect = 0.085
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 190 MPESTDVPIMVSASEARSTPLPPPDTP 110
MP +VPI + A STPLPPP P
Sbjct: 415 MPTPINVPITTPIAGALSTPLPPPIVP 441
>AF332204-1|AAK17975.1| 519|Caenorhabditis elegans nuclear receptor
NHR-48 protein.
Length = 519
Score = 31.5 bits (68), Expect = 0.085
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 190 MPESTDVPIMVSASEARSTPLPPPDTP 110
MP +VPI + A STPLPPP P
Sbjct: 117 MPTPINVPITTPIAGALSTPLPPPIVP 143
>AC024201-18|AAF36026.1| 430|Caenorhabditis elegans Hypothetical
protein Y71F9B.14 protein.
Length = 430
Score = 30.7 bits (66), Expect = 0.15
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -1
Query: 178 TDVPIMVSASEARSTPLPPPDTPKLCTKCEQNST-AMPTAITKLTSETAFRLIPP 17
T P MV+ ++A + P D P+ +T A+P +T TSE++ +PP
Sbjct: 216 TSAPRMVATTDAPKSTAPATDPPRTTIPPAIVTTEAIPPEVTTTTSESSTAPVPP 270
>AL032639-4|CAA21636.2| 858|Caenorhabditis elegans Hypothetical
protein Y38F1A.3 protein.
Length = 858
Score = 30.3 bits (65), Expect = 0.20
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Frame = +3
Query: 24 ISLNAVSLVNLVMAVGIAVEFCSHLVHSFXXXXXXXXXDRASEALT-------MMGTSVL 182
I L+ +S+ L+MA+G +V+F +H+ + R AL GTS +
Sbjct: 694 IDLDPISMTTLLMAIGFSVDFVAHITWHYYKGDFHSKRARIRHALAGIAWPMFQAGTSTM 753
Query: 183 SGITL 197
IT+
Sbjct: 754 LAITV 758
>Z77134-2|CAB00873.1| 877|Caenorhabditis elegans Hypothetical
protein R09H10.4 protein.
Length = 877
Score = 29.9 bits (64), Expect = 0.26
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +3
Query: 21 GISLNAVSLVNLVMAVGIAVEFCSHLVHSF 110
GI L+ +S+ L+M++G +V+F +H+ +
Sbjct: 729 GIDLDPISMACLIMSIGFSVDFPAHITFHY 758
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 28.3 bits (60), Expect = 0.79
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 8/56 (14%)
Frame = -1
Query: 148 EARSTPLPPPDTPK-LCTK------CEQNSTAMPTAITKLTSETAFRL-IPPLVPN 5
E + P+PPPD K + +K C + + + T+ T +T +++ L +PP+VP+
Sbjct: 91 EVSAPPIPPPDEGKCIISKASGREICYPSYSQLDTSCTDVTGQSSNGLVVPPVVPH 146
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 28.3 bits (60), Expect = 0.79
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 8/56 (14%)
Frame = -1
Query: 148 EARSTPLPPPDTPK-LCTK------CEQNSTAMPTAITKLTSETAFRL-IPPLVPN 5
E + P+PPPD K + +K C + + + T+ T +T +++ L +PP+VP+
Sbjct: 91 EVSAPPIPPPDEGKCIISKASGREICYPSYSQLDTSCTDVTGQSSNGLVVPPVVPH 146
>Z66496-6|CAA91281.3| 191|Caenorhabditis elegans Hypothetical
protein E04D5.4 protein.
Length = 191
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 151 SEARSTPLPPPDTPKLCTKCEQNSTAMPTAITKLTSETAF 32
S A+ TPL K C C STA P A +++ A+
Sbjct: 120 SNAKYTPLLQQFCAKTCGFCGSGSTAAPVACVDTSTQCAY 159
>Z48585-12|CAI46589.1| 191|Caenorhabditis elegans Hypothetical
protein E04D5.4 protein.
Length = 191
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 151 SEARSTPLPPPDTPKLCTKCEQNSTAMPTAITKLTSETAF 32
S A+ TPL K C C STA P A +++ A+
Sbjct: 120 SNAKYTPLLQQFCAKTCGFCGSGSTAAPVACVDTSTQCAY 159
>Z81082-2|CAE17818.1| 124|Caenorhabditis elegans Hypothetical
protein F42G4.7 protein.
Length = 124
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -1
Query: 187 PESTDVPIMVSASEARSTPLPPPDTPKLCTKCEQNSTAMP 68
PES D P V +TP P P TK + + T+ P
Sbjct: 83 PESDDTPHNVHLMSYGTTPRPSQKQPGPITKTQIDKTSSP 122
>AF043693-11|AAB97541.2| 213|Caenorhabditis elegans Hypothetical
protein C34B2.9 protein.
Length = 213
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -1
Query: 187 PESTDVPIMVSASEARSTPLPPPDTPKLCTKCEQNS 80
P S+ VP+ VS S+ +PPP P L T NS
Sbjct: 117 PSSSPVPLHVS-----SSTIPPPPLPPLPTTLHSNS 147
>AF036703-5|AAY86288.1| 106|Caenorhabditis elegans Hypothetical
protein T11F8.5 protein.
Length = 106
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -1
Query: 187 PESTDVPIMVSASEARSTPLPPPDTPKLCTKCEQNSTAMP 68
PES D P V +TP P P TK + + T+ P
Sbjct: 65 PESDDTPHNVHLMSYGTTPRPSQKQPGPITKTQIDETSSP 104
>AC024794-7|AAK68501.3| 279|Caenorhabditis elegans Hypothetical
protein Y48G1BM.9 protein.
Length = 279
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -1
Query: 187 PESTDVPIMVSASEARSTPLPPPDTPKLCTKCEQNSTAMP 68
PES D P V +TP P P TK + + T+ P
Sbjct: 238 PESDDAPHNVHLMSYGTTPRPSQKQPGPITKTQIDETSSP 277
>AC024793-6|AAF60688.1| 162|Caenorhabditis elegans Hypothetical
protein Y48G1BL.5 protein.
Length = 162
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -1
Query: 187 PESTDVPIMVSASEARSTPLPPPDTPKLCTKCEQNSTAMP 68
PES D P V +TP P P TK + + T+ P
Sbjct: 121 PESDDTPHNVHLMSYGTTPRPSQKQPGPITKTQIDETSSP 160
>AC006762-2|AAF60558.2| 607|Caenorhabditis elegans Hypothetical
protein Y42G9A.4a protein.
Length = 607
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = -1
Query: 196 SVMPESTDVPIMVSASEARSTPLPPPDTPKLCTKCEQNSTAMPTA 62
S PE ++ I +S TPLP P ST PT+
Sbjct: 194 SAQPEKSEAEIALSLPVPPLTPLPSPGAQSTAPPVFPTSTPTPTS 238
>Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical
protein W04G5.9 protein.
Length = 405
Score = 26.2 bits (55), Expect = 3.2
Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Frame = -1
Query: 187 PESTDVPIMVSASEARSTPLPPPDTPKLCTKCEQNSTAMPTAIT-KLTSETAFRLIPPLV 11
P I S A + LP PD P K T T ++T+ A L PP
Sbjct: 78 PAPMSAGIQTRGSYANTKSLPVPDLPPSTLKTTTKPVITATRSTARITTTKASTLEPPEA 137
Query: 10 P 8
P
Sbjct: 138 P 138
>Z11115-2|CAA77450.1| 599|Caenorhabditis elegans Hypothetical
protein ZK637.3 protein.
Length = 599
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 175 DVPIMVSASEARSTPLPPPDTPKLCTKCEQNST 77
D+ ++ A+ A + P+ CTKCE+N T
Sbjct: 331 DMVVIAQATRANTRPVIKVMDNAECTKCEKNGT 363
>U23484-9|AAC46771.1| 304|Caenorhabditis elegans Hypothetical
protein EEED8.11 protein.
Length = 304
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = -1
Query: 181 STDVPIMVSASEARSTPLPPPDTPKLCTKCEQNSTAMPTAITKLTSETAFRLI 23
+T P + + +TP P K+C + + P A TSE +LI
Sbjct: 77 TTTTPTTTTTTTTTTTPEPTTTKVKVCPQGYTSFLRTPAADNSFTSEWCMQLI 129
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -1
Query: 148 EARSTPLPPPDTPKLCTKCEQNSTAMPTAITKLTSET 38
++ STP TP T +T PT T T+ T
Sbjct: 55 KSTSTPSTSTSTPTTTTTTTTTTTTTPTTTTTTTTTT 91
>Z48585-1|CAA88486.1| 154|Caenorhabditis elegans Hypothetical
protein ZK673.1 protein.
Length = 154
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -1
Query: 151 SEARSTPLPPPDTPKLCTKCEQNSTAMP 68
S A+ TPL PK C C STA P
Sbjct: 83 SNAKYTPLLQQFCPKTCGFCGGGSTAAP 110
>U80955-5|AAG01559.2| 573|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 2,
isoform a protein.
Length = 573
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -1
Query: 181 STDVPIMVSASEARSTPLPPPDTPKLCTKCEQNSTAMPTAITKLTSETAFRLIPPL 14
++ +P M SASE R + PP ++ T+ E+ P ++ R++PP+
Sbjct: 513 NSKIPRMSSASEQRKSSQPPQPAVRMQTQFEE-----PRKYSQNGCAPPSRIVPPM 563
>U80955-4|ABB51180.1| 589|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 2,
isoform b protein.
Length = 589
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -1
Query: 181 STDVPIMVSASEARSTPLPPPDTPKLCTKCEQNSTAMPTAITKLTSETAFRLIPPL 14
++ +P M SASE R + PP ++ T+ E+ P ++ R++PP+
Sbjct: 529 NSKIPRMSSASEQRKSSQPPQPAVRMQTQFEE-----PRKYSQNGCAPPSRIVPPM 579
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 196 SVMPESTDVPIMVSASEARSTPLPPPDTPKLCTKCEQNSTAMP-TAITKLTS 44
S P+S+ +P +A++A++T TP T + T P T++ TS
Sbjct: 653 SATPDSSTIPSASAAADAQTTTSSETSTPGEPTSSTPSDTPAPSTSVPPPTS 704
>AL021497-17|CAD56613.1| 138|Caenorhabditis elegans Hypothetical
protein Y51A2D.20 protein.
Length = 138
Score = 25.4 bits (53), Expect = 5.6
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -1
Query: 172 VPIMVS--ASEARSTPLPPPDTPKLCTKCEQNST 77
VPI S S RS P PPP K EQNS+
Sbjct: 29 VPIRNSPMTSSLRSRPPPPPYNRSPAHKIEQNSS 62
>Z81520-4|CAE17808.1| 181|Caenorhabditis elegans Hypothetical
protein F31B9.4 protein.
Length = 181
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/51 (25%), Positives = 21/51 (41%)
Frame = -1
Query: 157 SASEARSTPLPPPDTPKLCTKCEQNSTAMPTAITKLTSETAFRLIPPLVPN 5
S + ++P P T T + T +T T+ T PPL+P+
Sbjct: 27 STTTTTTSPAPNITTTTTTTTIAPPTNTTTTILTTTTTVTTTTTSPPLIPD 77
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/65 (23%), Positives = 24/65 (36%)
Frame = -1
Query: 199 VSVMPESTDVPIMVSASEARSTPLPPPDTPKLCTKCEQNSTAMPTAITKLTSETAFRLIP 20
V+V T VP + A T P + + +PT T++T +
Sbjct: 484 VTVPTTPTPVPTTTNTPPANPTTATPTTVGTMTPSTGTTTVPVPTTTGSPTTQTTAPVTK 543
Query: 19 PLVPN 5
P VP+
Sbjct: 544 PTVPS 548
>L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell
lineage protein 36 protein.
Length = 962
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -1
Query: 184 ESTDVPIMVSASEARSTPLPPPD-TPKLCTKCEQNSTAMPTAITKLTSET 38
E+ VP+ +S + ++TP P +CT CE +S ++ T L + T
Sbjct: 241 EAFGVPVAISP-DVKTTPSKKSSRVPWVCTVCEFHSCSVVELQTHLLNHT 289
>AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein.
Length = 962
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -1
Query: 184 ESTDVPIMVSASEARSTPLPPPD-TPKLCTKCEQNSTAMPTAITKLTSET 38
E+ VP+ +S + ++TP P +CT CE +S ++ T L + T
Sbjct: 241 EAFGVPVAISP-DVKTTPSKKSSRVPWVCTVCEFHSCSVVELQTHLLNHT 289
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 190 MPESTDVPIMVSASEARSTPLPPPDTPKLCTKCEQNSTAMPTAI 59
M + D PI +EA TP P D P L + E + M T +
Sbjct: 501 MKYTPDAPI-AQLNEAEETPQLPSDVPMLFQERELPVSMMSTTV 543
>Z81544-3|CAB04435.1| 255|Caenorhabditis elegans Hypothetical
protein F49C5.7 protein.
Length = 255
Score = 24.6 bits (51), Expect = 9.8
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -1
Query: 196 SVMPESTDVPIMVSASEARSTPLPPPDTPKLCTKCEQNSTAMPTAIT 56
S S+ S +++ ST P P + T Q+STA A+T
Sbjct: 37 STTATSSSATETTSNTDSSSTATPSPSSASSTTPTAQSSTATSPAMT 83
>Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical protein
ZK512.5 protein.
Length = 1232
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 196 SVMPESTDVPIMVSASEARSTPLPPPDTP 110
+V+PE T I+ S P+PP TP
Sbjct: 938 NVVPEMTPPAIVKPPMPTLSMPIPPVSTP 966
>AL117195-28|CAB55014.1| 458|Caenorhabditis elegans Hypothetical
protein Y57A10A.11 protein.
Length = 458
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Frame = -1
Query: 187 PESTDVPIMVSASEARS---TPLPPPDTPKLCTKCEQNSTAMPTAITKLTSET 38
P P++ A E + P PPP + T + +T T T TS T
Sbjct: 96 PPKFGYPVVGEAKEEANPYDAPAPPPPKTEAPTTTTKKTTTTTTTTTTTTSTT 148
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/40 (22%), Positives = 24/40 (60%)
Frame = -1
Query: 142 RSTPLPPPDTPKLCTKCEQNSTAMPTAITKLTSETAFRLI 23
++T +PP D K+ ++ S + PT++ + T ++ +++
Sbjct: 911 KTTKMPPVDQKKISSEAPPISDSAPTSVHQQTPKSPKQIL 950
>AC024869-5|AAK68606.3| 1126|Caenorhabditis elegans Hypothetical
protein Y75B7AL.4a protein.
Length = 1126
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 142 RSTPLPPPDTP 110
RSTPLPPP P
Sbjct: 821 RSTPLPPPPIP 831
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,381,006
Number of Sequences: 27780
Number of extensions: 45162
Number of successful extensions: 377
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,740,198
effective HSP length: 46
effective length of database: 11,462,318
effective search space used: 229246360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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