Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_B24
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   1.3  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   3.9  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    25   6.7  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    25   6.7  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    25   6.7  

>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 234 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 106
           A  GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 289 FPYLHYSID*RLFTLETCCGYGYEPARHL 203
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -1

Query: 171 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQA 28
           P  VSGH      LR+   IS    SM +ERS       R ++  + +
Sbjct: 617 PLPVSGHTNNAHPLRLSTEISASQLSMIIERSVELSKHKRLNKELIDS 664


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 90  PWNPIEGRYGSEREEHRI 143
           P+ P+EG Y + ++ HRI
Sbjct: 3   PYEPVEGLYVNAKQYHRI 20


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 353 TRRAPVLRANPYSEVTDPICRLPLPTLFYR 264
           T RAPVL A   +E +  +   PLP L ++
Sbjct: 297 TFRAPVLEAYAMTEASHQMTTNPLPPLVHK 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,910,850
Number of Sequences: 5004
Number of extensions: 39561
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)