Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_B24
(438 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0962 + 33402971-33403345,33403633-33403767,33408316-33408597 33 0.13
05_06_0098 + 25560158-25560925 32 0.23
06_01_0350 + 2534422-2535615 31 0.53
02_05_0300 + 27681204-27681656,27681745-27681840,27681933-276820... 29 1.2
12_02_0242 + 16213265-16213945,16216311-16216586,16217051-16217128 29 1.6
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 2.2
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 28 2.9
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414 28 2.9
04_03_0681 + 18628107-18629346,18630476-18630486,18630836-186309... 28 3.8
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 28 3.8
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 27 6.6
02_05_0042 + 25351648-25351724,25351983-25352010,25352311-253523... 27 6.6
01_01_0012 + 71903-72935,73468-73981,74619-76008 27 6.6
08_02_1312 + 26055372-26056056,26056935-26057187,26057277-260580... 27 8.7
03_02_0989 - 13006783-13007076,13007311-13007559,13010214-130103... 27 8.7
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559... 27 8.7
01_05_0330 - 21053162-21053557,21053682-21054083 27 8.7
>01_06_0962 + 33402971-33403345,33403633-33403767,33408316-33408597
Length = 263
Score = 32.7 bits (71), Expect = 0.13
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 288 KSANWIRNFGIRIGSEDRGASGLDGKRMRPVPGLEPY 398
K A +R+ G R+ + D GASG+D + +R VP Y
Sbjct: 26 KVATRLRSAGYRVTAPDLGASGVDPRPLREVPTFRDY 62
>05_06_0098 + 25560158-25560925
Length = 255
Score = 31.9 bits (69), Expect = 0.23
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -2
Query: 380 HRPHPLPVQTRRAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 201
HRP P P + P L +P + V I P PT F + + ++++ + T P
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 0.53
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 95 PWNSNAQAEKKTLPGPLGGVFRP 27
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>02_05_0300 +
27681204-27681656,27681745-27681840,27681933-27682022,
27682126-27682227,27682310-27682456,27683608-27683748,
27683749-27683808,27685133-27685230,27685308-27685410,
27685954-27686037
Length = 457
Score = 29.5 bits (63), Expect = 1.2
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = +3
Query: 105 EGRYGSEREEHRICGGVRILSADLENSGEGCT-WRC-RAGSYPYPQQVSKVKSL*SIE*C 278
+GR+G++R HR+ G +A SG+ C WR R +P P S++ +
Sbjct: 6 DGRFGNKRVHHRL--GPANGAASSSTSGKVCIHWRAGRCNRFPCPYLHSELPEATAKRPS 63
Query: 279 R*GKSANWIRNFGIRIGSEDRGASGLDG 362
+ G N RN G RGA G G
Sbjct: 64 QSGGGGNVWRN-PHSGGGGGRGAGGAGG 90
>12_02_0242 + 16213265-16213945,16216311-16216586,16217051-16217128
Length = 344
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 6 RRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRYGSEREEHRIC 146
RRRG P+ P AAE + + LF +R P+ G Y + ++E +C
Sbjct: 293 RRRGQPQ-PTLAAEETARPLLFLSKIR----PV-GGYSAYKDEEAVC 333
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 365 LPVQTRRAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 252
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 28.3 bits (60), Expect = 2.9
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = -2
Query: 404 PGVGLQAR-HRPHPLPVQTRRAPVLRANPYSEVTDP--ICRLPLPTLFYRLEALHLGDLL 234
P L R RP P PV R LRA PY P + + L + L ++++ D
Sbjct: 5 PAANLDVRVERPRPPPVHPHRPGSLRARPYYRRWTPWIVAAIALSCVVVFLVSMYVNDCP 64
Query: 233 R 231
R
Sbjct: 65 R 65
>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
Length = 520
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 279 YIILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSG 154
+ +L+ RG P +PAA RRD ++P + Q P G
Sbjct: 28 HAVLAVRGPRPLQPAASASFRRRDRWFHLPLHDPQPPPAAEG 69
>04_03_0681 +
18628107-18629346,18630476-18630486,18630836-18630943,
18631158-18631250
Length = 483
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 377 RPHPLPVQTRRAPVLRANPYSEVTDP 300
RP+PL V +RRA VL + V DP
Sbjct: 125 RPNPLDVVSRRAGVLSCGDHCLVVDP 150
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -3
Query: 232 GYGYEPARHLHVHPSPEFSRSAES-IRTPPQMRCSSRSEPYLPSI 101
G+ P+ H P P+ S R PP R S RSE P +
Sbjct: 26 GFDVTPSPHAEPSPRPQLRHDNPSRSRVPPLERVSRRSEVVFPPL 70
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 383 RHRPHPLPVQTRRAPVLRANP 321
+++ H +PVQ +PVL+ NP
Sbjct: 336 KNQDHSVPVQKNHSPVLKTNP 356
>02_05_0042 +
25351648-25351724,25351983-25352010,25352311-25352373,
25352880-25352945,25353029-25353076,25353338-25353379,
25353499-25353714,25354066-25354188,25354352-25354564,
25354930-25355016,25355259-25355507,25356386-25356507,
25357135-25357225,25358467-25358882,25359489-25359609
Length = 653
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -2
Query: 155 DTAANAVLFAFRTISPFYRIPWNSNAQAEKKTLPGPLGGVFRPLWVTPSPR 3
D N + F FR ISP + + A++K + GV L P PR
Sbjct: 270 DAEENDLRFCFRVISPMKAYTLQAESGADQKDWIEKVTGVIASLLNLPFPR 320
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 193 PSPEFSRSAESIRTPPQMRCSSRSEPYLPSI 101
PSP RS R+P + R S RS Y P +
Sbjct: 518 PSPSARRSKSRSRSPIKYRRSRRSRSYSPPV 548
>08_02_1312 +
26055372-26056056,26056935-26057187,26057277-26058081,
26058828-26058952,26059081-26059165,26059473-26059626,
26059724-26059761,26059842-26060109,26060257-26060380,
26060508-26060868,26061904-26062272,26062528-26062609,
26063042-26063193
Length = 1166
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 352 VWTGSGCGRCRAWSPTPGDSSEDDD 426
VWTG GR +W S+DDD
Sbjct: 178 VWTGHKDGRIMSWRMDLAAGSDDDD 202
>03_02_0989 -
13006783-13007076,13007311-13007559,13010214-13010349,
13010777-13010995,13013796-13014174,13014365-13014496,
13015625-13015667
Length = 483
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 359 VQTRRAPVLRANPYSEVTDPICRLPLPTLFYRLEALH 249
++T A L+++P S+ R+PLP R+EAL+
Sbjct: 110 LETIIARNLKSSPLSQQVTRALRIPLPRTLKRIEALN 146
>01_06_0293 - 28254673-28254878,28255189-28255306,28255767-28255961,
28256701-28256800,28256887-28256972,28257078-28257239,
28257965-28258101,28258233-28258281,28258688-28258746,
28258862-28258896,28259384-28259433,28260173-28260332,
28260898-28260963,28261065-28261162,28261649-28261696,
28262114-28262242,28262667-28262769,28262858-28262954,
28263181-28263241,28263659-28263740,28263845-28263962,
28264039-28266325
Length = 1481
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 82 TLRQKRKLFPDLSAASSGHFGLPRRL 5
+LRQ+RK DL GHF L ++L
Sbjct: 1105 SLRQRRKYIHDLFQEKPGHFELAQQL 1130
>01_05_0330 - 21053162-21053557,21053682-21054083
Length = 265
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 294 ANWIRNFGIRIGSEDRGASGLDGKRMR--PVPGLEPYAR 404
A +R G R+ + D ASG D +R+R P + Y+R
Sbjct: 35 ATLLRAAGHRVHAPDLAASGADARRLRDDDAPTFDDYSR 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,973,089
Number of Sequences: 37544
Number of extensions: 323204
Number of successful extensions: 1292
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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