Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_B24
         (438 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U53180-1|AAK68285.1|  492|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF083226-1|AAD03684.1|  560|Caenorhabditis elegans nuclear recep...    27   7.9  
AF036702-12|AAP31437.1|  559|Caenorhabditis elegans Nuclear horm...    27   7.9  
AF036702-11|AAP31436.1|  560|Caenorhabditis elegans Nuclear horm...    27   7.9  

>Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical
           protein R11A8.1 protein.
          Length = 552

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = -2

Query: 176 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGPLGGVFRPLWVTP 12
           K+ +E  D A N +      FR   I+PF   P+ +N Q   + +PGP   ++ P  V  
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP--SLYNPYPVQA 492

Query: 11  SP 6
           +P
Sbjct: 493 NP 494


>U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical
           protein C04E7.4 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 160 IRTPPQMRCSSRSEPYLPSIGFHGT 86
           I T  Q + SS  +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323


>U53180-1|AAK68285.1|  492|Caenorhabditis elegans Hypothetical
           protein D1014.7 protein.
          Length = 492

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 181 FSRSAESIRTPPQMRCSSRSEP--YLPSIGFHGTRT 80
           FS S E+  T  Q R +  S P  YLPSIG + T T
Sbjct: 11  FSASNENNETIKQGRDADSSSPSEYLPSIGHYFTHT 46


>AF083226-1|AAD03684.1|  560|Caenorhabditis elegans nuclear receptor
           NHR-8 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 156 RILSADLENSGEGCTWRCRAGSYPYPQQVS 245
           ++++   E S + CT +C+ G YP  Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178


>AF036702-12|AAP31437.1|  559|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 8, isoform b protein.
          Length = 559

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 156 RILSADLENSGEGCTWRCRAGSYPYPQQVS 245
           ++++   E S + CT +C+ G YP  Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178


>AF036702-11|AAP31436.1|  560|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 8, isoform a protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 156 RILSADLENSGEGCTWRCRAGSYPYPQQVS 245
           ++++   E S + CT +C+ G YP  Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,845,308
Number of Sequences: 27780
Number of extensions: 234214
Number of successful extensions: 837
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)