Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_B24
(438 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 2.6
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 22 2.6
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 22 3.4
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 22 3.4
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 21 4.5
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 21 4.5
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 21 5.9
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 21 5.9
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 21 5.9
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 21 5.9
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 5.9
DQ435336-1|ABD92651.1| 135|Apis mellifera OBP19 protein. 21 7.9
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 21 7.9
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 22.2 bits (45), Expect = 2.6
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 294 ANWIRNFGIRIGSEDRGASGLDGKRMRPVPGLEPYAR*F 410
A+ I+N GI E+R G++G+R GL+ Y R F
Sbjct: 211 ADQIKN-GIVSPQEER-PKGINGRRASLFCGLQKYTRSF 247
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 22.2 bits (45), Expect = 2.6
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 294 ANWIRNFGIRIGSEDRGASGLDGKRMRPVPGLEPYAR*F 410
A+ I+N GI E+R G++G+R GL+ Y R F
Sbjct: 206 ADQIKN-GIVSPQEER-PKGINGRRASLFCGLQKYTRSF 242
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 21.8 bits (44), Expect = 3.4
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -3
Query: 124 SEPYLPSIGFHGTRTLRQKRKLFPDLSA 41
SE P+ HG R RQ+ + D +
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKS 499
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 21.8 bits (44), Expect = 3.4
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 365 ADAAGAGPGALRQVIRPRT 421
A A GAG G R + P T
Sbjct: 595 ASAGGAGGGGARSYVDPHT 613
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 21.4 bits (43), Expect = 4.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 421 RPRTNHLA*GSRPGTGRIRFPSK 353
R R+ ++ S PGTGR P+K
Sbjct: 384 RNRSGLVSGSSTPGTGREHDPAK 406
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 21.4 bits (43), Expect = 4.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 55 PDLSAASSGHFGLPRRLV 2
PDL+ S G GLP ++
Sbjct: 336 PDLAGTSQGSAGLPSAIL 353
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 21.0 bits (42), Expect = 5.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 101 RIPWNSNAQAEKKTLPGPLG 42
+IPW+ N +A K G G
Sbjct: 334 QIPWDKNVEALAKWANGQTG 353
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 21.0 bits (42), Expect = 5.9
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +1
Query: 361 GSGCGRCRAWSPTPGDSSEDDD 426
G+G G A G+ EDDD
Sbjct: 373 GAGVGAMNANGEAVGEVDEDDD 394
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 21.0 bits (42), Expect = 5.9
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -3
Query: 436 NKVCHRPRTNHLA*GSRPGTGRIRFPSKPDAPRS 335
+++C PR+ HL G R PS+ ++ S
Sbjct: 379 SQLCPTPRSTHLKVSGINRVGSTRRPSRRNSCES 412
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 21.0 bits (42), Expect = 5.9
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +1
Query: 10 DGVTQSGLKTPPRGPG 57
DG L +PPR PG
Sbjct: 128 DGPPSVSLSSPPREPG 143
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.0 bits (42), Expect = 5.9
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -2
Query: 374 PHPLPVQTRRAPVLRANPYSEV 309
P PLP A + + +PYS +
Sbjct: 652 PFPLPPNLASANISQLDPYSSL 673
>DQ435336-1|ABD92651.1| 135|Apis mellifera OBP19 protein.
Length = 135
Score = 20.6 bits (41), Expect = 7.9
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 151 VSGYSLRTLKIQVRDVR 201
V+ ++ LKIQ+RDV+
Sbjct: 14 VNAMTIEELKIQLRDVQ 30
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 20.6 bits (41), Expect = 7.9
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1
Query: 37 TPPRGPGRV 63
+PPRGPG V
Sbjct: 397 SPPRGPGGV 405
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,140
Number of Sequences: 438
Number of extensions: 3286
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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