Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_B22
(238 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 113 1e-26
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 113 1e-26
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 113 1e-26
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 113 1e-26
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 113 1e-26
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 113 1e-26
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 113 1e-26
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 113 1e-26
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 113 1e-26
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 113 1e-26
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 112 4e-26
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 74 2e-14
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 67 2e-12
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 56 3e-09
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 55 8e-09
Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr... 29 0.44
Z78544-1|CAB01761.1| 218|Caenorhabditis elegans Hypothetical pr... 28 0.77
Z81102-6|CAB03207.2| 571|Caenorhabditis elegans Hypothetical pr... 28 1.0
Z81102-4|CAB03204.2| 639|Caenorhabditis elegans Hypothetical pr... 28 1.0
Z69659-7|CAA93488.2| 571|Caenorhabditis elegans Hypothetical pr... 28 1.0
Z69659-6|CAA93486.2| 639|Caenorhabditis elegans Hypothetical pr... 28 1.0
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr... 27 1.3
Z81551-1|CAB04483.2| 335|Caenorhabditis elegans Hypothetical pr... 27 2.4
Z79598-6|CAD44108.1| 89|Caenorhabditis elegans Hypothetical pr... 26 3.1
AL110485-20|CAB60368.2| 600|Caenorhabditis elegans Hypothetical... 26 3.1
Z81078-2|CAI79243.1| 148|Caenorhabditis elegans Hypothetical pr... 26 4.1
AL021572-1|CAA16516.2| 654|Caenorhabditis elegans Hypothetical ... 26 4.1
Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z68119-6|CAE17916.1| 181|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 25 5.4
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 25 5.4
AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal ... 25 5.4
AF024503-1|AAG24089.2| 527|Caenorhabditis elegans Hypothetical ... 25 5.4
AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain (... 25 7.2
AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain (... 25 7.2
AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain (... 25 7.2
AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical ... 25 7.2
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical pr... 25 9.5
U41007-6|AAA82269.2| 348|Caenorhabditis elegans Hypothetical pr... 25 9.5
AL132949-33|CAB61075.2| 108|Caenorhabditis elegans Hypothetical... 25 9.5
AL132860-1|CAB60513.2| 616|Caenorhabditis elegans Hypothetical ... 25 9.5
AF125960-3|AAD14737.1| 446|Caenorhabditis elegans Hypothetical ... 25 9.5
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 113 bits (273), Expect = 1e-26
Identities = 49/49 (100%), Positives = 49/49 (100%)
Frame = +1
Query: 10 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 156
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 79 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Score = 50.4 bits (115), Expect = 2e-07
Identities = 25/45 (55%), Positives = 30/45 (66%)
Frame = +2
Query: 104 PSTPKPTERR*HRLCSRPFDTQAMYVAIQAVLSFCASGRTTGIVL 238
P PK + ++ F+T AMYVAIQAVLS ASGRTTG+VL
Sbjct: 110 PLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVL 154
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 113 bits (273), Expect = 1e-26
Identities = 49/49 (100%), Positives = 49/49 (100%)
Frame = +1
Query: 10 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 156
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 79 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Score = 50.8 bits (116), Expect = 1e-07
Identities = 26/45 (57%), Positives = 30/45 (66%)
Frame = +2
Query: 104 PSTPKPTERR*HRLCSRPFDTQAMYVAIQAVLSFCASGRTTGIVL 238
P PK + ++ F+T AMYVAIQAVLS ASGRTTGIVL
Sbjct: 110 PLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVL 154
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 113 bits (273), Expect = 1e-26
Identities = 49/49 (100%), Positives = 49/49 (100%)
Frame = +1
Query: 10 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 156
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 79 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Score = 50.4 bits (115), Expect = 2e-07
Identities = 25/45 (55%), Positives = 30/45 (66%)
Frame = +2
Query: 104 PSTPKPTERR*HRLCSRPFDTQAMYVAIQAVLSFCASGRTTGIVL 238
P PK + ++ F+T AMYVAIQAVLS ASGRTTG+VL
Sbjct: 110 PLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVL 154
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 113 bits (273), Expect = 1e-26
Identities = 49/49 (100%), Positives = 49/49 (100%)
Frame = +1
Query: 10 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 156
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 79 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Score = 50.4 bits (115), Expect = 2e-07
Identities = 25/45 (55%), Positives = 30/45 (66%)
Frame = +2
Query: 104 PSTPKPTERR*HRLCSRPFDTQAMYVAIQAVLSFCASGRTTGIVL 238
P PK + ++ F+T AMYVAIQAVLS ASGRTTG+VL
Sbjct: 110 PLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVL 154
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 113 bits (273), Expect = 1e-26
Identities = 49/49 (100%), Positives = 49/49 (100%)
Frame = +1
Query: 10 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 156
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 79 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Score = 50.4 bits (115), Expect = 2e-07
Identities = 25/45 (55%), Positives = 30/45 (66%)
Frame = +2
Query: 104 PSTPKPTERR*HRLCSRPFDTQAMYVAIQAVLSFCASGRTTGIVL 238
P PK + ++ F+T AMYVAIQAVLS ASGRTTG+VL
Sbjct: 110 PLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVL 154
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 113 bits (273), Expect = 1e-26
Identities = 49/49 (100%), Positives = 49/49 (100%)
Frame = +1
Query: 10 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 156
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 79 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Score = 50.8 bits (116), Expect = 1e-07
Identities = 26/45 (57%), Positives = 30/45 (66%)
Frame = +2
Query: 104 PSTPKPTERR*HRLCSRPFDTQAMYVAIQAVLSFCASGRTTGIVL 238
P PK + ++ F+T AMYVAIQAVLS ASGRTTGIVL
Sbjct: 110 PLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVL 154
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 113 bits (273), Expect = 1e-26
Identities = 49/49 (100%), Positives = 49/49 (100%)
Frame = +1
Query: 10 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 156
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 79 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Score = 50.4 bits (115), Expect = 2e-07
Identities = 25/45 (55%), Positives = 30/45 (66%)
Frame = +2
Query: 104 PSTPKPTERR*HRLCSRPFDTQAMYVAIQAVLSFCASGRTTGIVL 238
P PK + ++ F+T AMYVAIQAVLS ASGRTTG+VL
Sbjct: 110 PLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVL 154
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 113 bits (273), Expect = 1e-26
Identities = 49/49 (100%), Positives = 49/49 (100%)
Frame = +1
Query: 10 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 156
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 35 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 83
Score = 50.4 bits (115), Expect = 2e-07
Identities = 25/45 (55%), Positives = 30/45 (66%)
Frame = +2
Query: 104 PSTPKPTERR*HRLCSRPFDTQAMYVAIQAVLSFCASGRTTGIVL 238
P PK + ++ F+T AMYVAIQAVLS ASGRTTG+VL
Sbjct: 66 PLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVL 110
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 113 bits (273), Expect = 1e-26
Identities = 49/49 (100%), Positives = 49/49 (100%)
Frame = +1
Query: 10 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 156
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 65 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 113
Score = 50.4 bits (115), Expect = 2e-07
Identities = 25/45 (55%), Positives = 30/45 (66%)
Frame = +2
Query: 104 PSTPKPTERR*HRLCSRPFDTQAMYVAIQAVLSFCASGRTTGIVL 238
P PK + ++ F+T AMYVAIQAVLS ASGRTTG+VL
Sbjct: 96 PLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVL 140
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 113 bits (273), Expect = 1e-26
Identities = 49/49 (100%), Positives = 49/49 (100%)
Frame = +1
Query: 10 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 156
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 79 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Score = 50.4 bits (115), Expect = 2e-07
Identities = 25/45 (55%), Positives = 30/45 (66%)
Frame = +2
Query: 104 PSTPKPTERR*HRLCSRPFDTQAMYVAIQAVLSFCASGRTTGIVL 238
P PK + ++ F+T AMYVAIQAVLS ASGRTTG+VL
Sbjct: 110 PLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVL 154
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 112 bits (269), Expect = 4e-26
Identities = 47/49 (95%), Positives = 49/49 (100%)
Frame = +1
Query: 10 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 156
NWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPK+NREKMTQIMFET
Sbjct: 78 NWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKSNREKMTQIMFET 126
Score = 48.4 bits (110), Expect = 7e-07
Identities = 25/45 (55%), Positives = 29/45 (64%)
Frame = +2
Query: 104 PSTPKPTERR*HRLCSRPFDTQAMYVAIQAVLSFCASGRTTGIVL 238
P PK + ++ F+T AMYV IQAVLS ASGRTTGIVL
Sbjct: 109 PLNPKSNREKMTQIMFETFNTPAMYVNIQAVLSLYASGRTTGIVL 153
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 73.7 bits (173), Expect = 2e-14
Identities = 31/50 (62%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Frame = +1
Query: 10 NWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 156
NW DMEKIW + F ++L++ PEEHPVLLT+APLNP NRE+ +I FET
Sbjct: 81 NWSDMEKIWEYIFGQDQLKIFPEEHPVLLTDAPLNPLKNRERSAEIFFET 130
Score = 39.9 bits (89), Expect = 2e-04
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +2
Query: 104 PSTPKPTERR*HRLCSRPFDTQAMYVAIQAVLSFCASGRTTGIVL 238
P P R + F+ A+Y+ +QAVLS A+GRTTG+VL
Sbjct: 113 PLNPLKNRERSAEIFFETFNVPALYIQMQAVLSLYATGRTTGVVL 157
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 66.9 bits (156), Expect = 2e-12
Identities = 30/49 (61%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Frame = +1
Query: 10 NWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 153
NWDDM +W HTF E L + P+E +LLTE PLNP +NREKM Q+MFE
Sbjct: 81 NWDDMAHVWDHTFGPEKLDIDPKECKLLLTEPPLNPNSNREKMFQVMFE 129
Score = 31.9 bits (69), Expect = 0.063
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 71 PRSTQSCSPKLPSTPKPTERR*HRLCSRPFDTQAMYVAIQAVLSFCASGRTTGIVL 238
P+ + + P P + ++ + ++YVA+QAVL+ A G TG+V+
Sbjct: 102 PKECKLLLTEPPLNPNSNREKMFQVMFEQYGFNSIYVAVQAVLTLYAQGLLTGVVV 157
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 56.0 bits (129), Expect = 3e-09
Identities = 25/54 (46%), Positives = 31/54 (57%)
Frame = +1
Query: 10 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETVRHTG 171
+WD ME+ W + LR PE+H LLTE PLN NRE +IMFE+ G
Sbjct: 92 DWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLNTPENREYTAEIMFESFNVPG 145
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 54.8 bits (126), Expect = 8e-09
Identities = 24/48 (50%), Positives = 33/48 (68%)
Frame = +1
Query: 10 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 153
+W+ EKI H++ N L P EHPVL +E+ N +A REK+T+IMFE
Sbjct: 101 DWELFEKIVEHSYENILYSNPSEHPVLFSESSWNDRARREKLTEIMFE 148
>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical protein
T20G5.1 protein.
Length = 1681
Score = 29.1 bits (62), Expect = 0.44
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 46 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETVRHTG 171
F+N+L+ P P L LN KA E + Q++ + H G
Sbjct: 1440 FFNKLKQIPLVKPYLRQVQNLNNKAINEALNQLLIDEEDHAG 1481
>Z78544-1|CAB01761.1| 218|Caenorhabditis elegans Hypothetical
protein K04G11.1 protein.
Length = 218
Score = 28.3 bits (60), Expect = 0.77
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 2 HEATGTIWR--RSGITPSTMSCV*LPRSTQSCSPKLPSTPKPTERR 133
H+ T T W+ S T SCV P T+S + + P P P E++
Sbjct: 50 HDNTNT-WKVQHSARKKKTQSCVCRPYKTRSLAQQHPPPPPPIEKK 94
>Z81102-6|CAB03207.2| 571|Caenorhabditis elegans Hypothetical
protein F07C6.4c protein.
Length = 571
Score = 27.9 bits (59), Expect = 1.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 71 PRSTQSCSPKLPSTPKPTE 127
P STQ+ P+LP P+P E
Sbjct: 21 PMSTQTSEPQLPDVPEPNE 39
>Z81102-4|CAB03204.2| 639|Caenorhabditis elegans Hypothetical
protein F07C6.4b protein.
Length = 639
Score = 27.9 bits (59), Expect = 1.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 71 PRSTQSCSPKLPSTPKPTE 127
P STQ+ P+LP P+P E
Sbjct: 89 PMSTQTSEPQLPDVPEPNE 107
>Z69659-7|CAA93488.2| 571|Caenorhabditis elegans Hypothetical
protein F07C6.4c protein.
Length = 571
Score = 27.9 bits (59), Expect = 1.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 71 PRSTQSCSPKLPSTPKPTE 127
P STQ+ P+LP P+P E
Sbjct: 21 PMSTQTSEPQLPDVPEPNE 39
>Z69659-6|CAA93486.2| 639|Caenorhabditis elegans Hypothetical
protein F07C6.4b protein.
Length = 639
Score = 27.9 bits (59), Expect = 1.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 71 PRSTQSCSPKLPSTPKPTE 127
P STQ+ P+LP P+P E
Sbjct: 89 PMSTQTSEPQLPDVPEPNE 107
>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
B0207.5 protein.
Length = 3279
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 104 PSTPKPTERR*HRLCSRPFDTQAMYVAIQAVLSFCASGRT 223
PSTPKP ER+ C ++ Y I+ L C + T
Sbjct: 1977 PSTPKPVERKTSIDCHNVDMSKLSYTEIEEYLKRCRTRET 2016
>Z81551-1|CAB04483.2| 335|Caenorhabditis elegans Hypothetical
protein F56A12.1 protein.
Length = 335
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +1
Query: 10 NWDDMEKIWHHTFYNE--LRVAPEEHPV 87
+++D++ IWHH Y E L+ E +PV
Sbjct: 172 HYNDLQDIWHHARYKESQLKRGKELNPV 199
>Z79598-6|CAD44108.1| 89|Caenorhabditis elegans Hypothetical
protein C44H4.8 protein.
Length = 89
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 173 WPVCRTVSNIICVIFSLLALGLRGASVSKT 84
WP + ++C+I SLLA L KT
Sbjct: 29 WPTWAMILVVVCIILSLLAFFLGNFITKKT 58
>AL110485-20|CAB60368.2| 600|Caenorhabditis elegans Hypothetical
protein Y46G5A.25 protein.
Length = 600
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 195 TAWIATYMACVSNGLEHNLCHLLSVGFGV 109
T W+A Y + LC LS+GFGV
Sbjct: 250 TDWVALYNFKTWSAALTQLCFSLSIGFGV 278
>Z81078-2|CAI79243.1| 148|Caenorhabditis elegans Hypothetical
protein F36H2.4 protein.
Length = 148
Score = 25.8 bits (54), Expect = 4.1
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -2
Query: 141 LCHLLSVGFGVEGSFGEQDWVLLGSYTQLIVEGVMPDLL 25
LC L VG + FGEQ + S Q+IVEG + LL
Sbjct: 32 LCGLCRVGSAI---FGEQSFTNQMSTYQMIVEGYLIALL 67
>AL021572-1|CAA16516.2| 654|Caenorhabditis elegans Hypothetical
protein W06H3.1 protein.
Length = 654
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 76 EHPVLLTEAPLNPKANREKMTQ 141
E+P + + PLNP+ EK+T+
Sbjct: 129 ENPYIGAKTPLNPQERNEKLTE 150
>Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical
protein F26D2.2 protein.
Length = 489
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 49 YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETV 159
Y+E+ + ++ L E LN KA+ EK+ Q+ + V
Sbjct: 190 YDEMIIRQDQDREALEEGKLNLKASEEKLEQMREDCV 226
>Z68119-6|CAE17916.1| 181|Caenorhabditis elegans Hypothetical
protein T18D3.9 protein.
Length = 181
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 1 ARGNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN 111
A +WD +++ W + + L+V P V L PLN
Sbjct: 113 AEKSWDLLKEDWFNIYATSLKVWPFVQVVNLCFVPLN 149
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +1
Query: 10 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 153
NWD ++IW TF + V + LT+ A + ++I+F+
Sbjct: 70 NWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILFD 116
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +1
Query: 10 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 153
NWD ++IW TF + V + LT+ A + ++I+F+
Sbjct: 70 NWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILFD 116
>AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal
complex protein SYP-1 protein.
Length = 489
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 49 YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETV 159
Y+E+ + ++ L E LN KA+ EK+ Q+ + V
Sbjct: 190 YDEMIIRQDQDREALEEGKLNLKASEEKLEQMREDCV 226
>AF024503-1|AAG24089.2| 527|Caenorhabditis elegans Hypothetical
protein F31F4.7 protein.
Length = 527
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 115 KANREKMTQIMFETVRHTGH-VRSYPGRALFLRVRSY-HRYR 234
K++R + + FE+ HTG ++ Y +FL V S H YR
Sbjct: 137 KSHRPRYDAVFFESYLHTGKAIQEYLEIPVFLPVTSLTHDYR 178
>AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform c protein.
Length = 784
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 19 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 129
DM+ N +R A EE + + + P PK++R+
Sbjct: 144 DMQNETKDNVVNAVRAAKEELQITVQQLPQRPKSSRK 180
>AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform a protein.
Length = 814
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 19 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 129
DM+ N +R A EE + + + P PK++R+
Sbjct: 144 DMQNETKDNVVNAVRAAKEELQITVQQLPQRPKSSRK 180
>AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform b protein.
Length = 853
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 19 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 129
DM+ N +R A EE + + + P PK++R+
Sbjct: 183 DMQNETKDNVVNAVRAAKEELQITVQQLPQRPKSSRK 219
>AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical
protein Y46C8AL.2 protein.
Length = 456
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 11 TGTIWRRSGITPSTMSCV*LPRSTQSCSPKLPSTPK 118
T T + + TP+TM ST SP P+T K
Sbjct: 415 TPTTMKSTPTTPTTMKSTPTTPSTMKSSPTTPTTMK 450
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 56 SCV*LPRSTQSCSPKLPSTPKP 121
+C PR + SC P +P P P
Sbjct: 69 NCCGAPRPSPSCCPYVPPAPLP 90
>Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical
protein ZK970.5 protein.
Length = 1143
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 147 HNLCHLLSVGFGVEGSFGEQDWVLLG 70
H + + SVGFGV+ S G++ L G
Sbjct: 268 HVMLSMRSVGFGVQTSVGKKPLTLSG 293
>Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical
protein T23G5.3 protein.
Length = 262
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 74 RSTQSCSPKLPSTPKPTE 127
R+ +C P+LPSTP P +
Sbjct: 104 RTFCTCPPELPSTPIPNQ 121
>U41007-6|AAA82269.2| 348|Caenorhabditis elegans Hypothetical
protein C33H5.10 protein.
Length = 348
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +1
Query: 61 RVAPEEHPVLLTEAPLNPKANREKMTQIMFETVRHTGH 174
R ++HP+ + +AP + E+M + E+ R H
Sbjct: 254 RTKSKQHPLSIMDAPKDRGGRTEEMVGVKQESFRQQQH 291
>AL132949-33|CAB61075.2| 108|Caenorhabditis elegans Hypothetical
protein Y53F4B.6 protein.
Length = 108
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 68 LPRSTQSCSPKLPSTPKPT 124
+P + +CS K+PST K T
Sbjct: 22 IPTAENACSTKIPSTRKTT 40
>AL132860-1|CAB60513.2| 616|Caenorhabditis elegans Hypothetical
protein Y56A3A.2 protein.
Length = 616
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = -3
Query: 224 WYDRTRKKRARPG*LRTWPVCRTVSNIICV 135
+++ +R+ + R +R W C +++IIC+
Sbjct: 79 FFEESRRLKCRILVIRMWFACGVIASIICL 108
>AF125960-3|AAD14737.1| 446|Caenorhabditis elegans Hypothetical
protein T12B3.1 protein.
Length = 446
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 10 NWDDMEKIWHHTFYNELRVAPE 75
NWD EK W TF+ L+ E
Sbjct: 385 NWDQTEKDWSPTFWFLLKCIRE 406
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,346,493
Number of Sequences: 27780
Number of extensions: 121508
Number of successful extensions: 460
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 58
effective length of database: 11,128,958
effective search space used: 222579160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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