Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_B21
         (176 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ...    25   1.8  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    22   9.4  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    22   9.4  

>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 282

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 148 VLYRKSPNQVSDRHHSSIQIEG 83
           VL +K  N+++DR H S ++EG
Sbjct: 54  VLAKKCWNRLNDRFHKSPRVEG 75


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 109 HHSSIQIEGTXV*AEXATGTQEEVQDSHTPSSP 11
           H S+ Q+  + + +  ++       D+HTPS+P
Sbjct: 294 HTSASQVSLSPMASTASSSVTNSPVDTHTPSTP 326


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 127 NQVSDRHHSSIQIEGTXV*AEXATGTQEEVQDSH 26
           N VS R H+ +QI  T          + E Q+SH
Sbjct: 250 NAVSSRSHAVLQIYITQTPKSGEKQEESESQNSH 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.139    0.471 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 542,431
Number of Sequences: 5004
Number of extensions: 5664
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 39
effective length of database: 2,167,322
effective search space used: 41179118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)