Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_B21
         (176 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0232 + 21559467-21559532,21559586-21560200                       25   8.6  
01_04_0147 + 16713958-16714006,16714151-16714352,16715084-167151...    25   8.6  

>11_06_0232 + 21559467-21559532,21559586-21560200
          Length = 226

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 124 QVSDRHHSSIQIEGTXV*AEXATGTQEEVQDSHT 23
           +++ R H  +++E      E + G  EE  D HT
Sbjct: 82  RIASRRHGELRVEARAREREKSRGGAEEEVDGHT 115


>01_04_0147 +
           16713958-16714006,16714151-16714352,16715084-16715199,
           16715658-16715698
          Length = 135

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +1

Query: 127 LETCDTEPKIDAYN 168
           LET + EPKIDAY+
Sbjct: 107 LETINREPKIDAYS 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.139    0.471 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,436,628
Number of Sequences: 37544
Number of extensions: 36080
Number of successful extensions: 65
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 14,793,348
effective HSP length: 38
effective length of database: 13,366,676
effective search space used: 267333520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)