Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_B21
         (176 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-10|CAB60358.2|  304|Caenorhabditis elegans Hypothetical...    27   1.3  
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p...    26   3.1  
AF000263-13|AAO21393.1|  695|Caenorhabditis elegans Hypothetical...    26   3.1  
AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical...    26   3.1  
AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical...    26   3.1  
AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical ...    26   3.1  
AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical ...    26   3.1  
U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical pr...    25   7.1  

>AL110485-10|CAB60358.2|  304|Caenorhabditis elegans Hypothetical
           protein Y46G5A.15 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 160 RQSLVLYRKSPNQVSDRHH 104
           R+S   YR+SPN+ S+RHH
Sbjct: 35  RKSRDRYRRSPNRNSNRHH 53


>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
           protein R11G1.1 protein.
          Length = 1656

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
 Frame = -2

Query: 172 YDCRRQSLVLYRKSPNQVSDRHHSSIQIEGTXV*AEXATGT--QEEVQDSHTPSSP 11
           Y C R    LY   P       H S+ +EG  + ++ +T T     V D  TP  P
Sbjct: 156 YRCARNQSGLYLPKPVPPPPEDHPSLYVEGCSMCSKPSTVTLPSNPVIDYTTPKYP 211


>AF000263-13|AAO21393.1|  695|Caenorhabditis elegans Hypothetical
           protein T08B2.5g protein.
          Length = 695

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 175 CYDCRRQ-SLVLYRKSPNQVSDRHHSSIQIEGTXV*AEXATGTQEEVQDSHTPSSPR 8
           C  C+R  S V   +   + SD H ++++ +      E A   QEE +D+  P  P+
Sbjct: 513 CMLCKRAFSDVEVLRKHVEKSDLHRNNLEAKRAEWGRETAAKLQEEEEDASAPDLPK 569


>AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical
           protein T08B2.5f protein.
          Length = 838

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 175 CYDCRRQ-SLVLYRKSPNQVSDRHHSSIQIEGTXV*AEXATGTQEEVQDSHTPSSPR 8
           C  C+R  S V   +   + SD H ++++ +      E A   QEE +D+  P  P+
Sbjct: 656 CMLCKRAFSDVEVLRKHVEKSDLHRNNLEAKRAEWGRETAAKLQEEEEDASAPDLPK 712


>AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical
           protein T08B2.5c protein.
          Length = 866

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 175 CYDCRRQ-SLVLYRKSPNQVSDRHHSSIQIEGTXV*AEXATGTQEEVQDSHTPSSPR 8
           C  C+R  S V   +   + SD H ++++ +      E A   QEE +D+  P  P+
Sbjct: 684 CMLCKRAFSDVEVLRKHVEKSDLHRNNLEAKRAEWGRETAAKLQEEEEDASAPDLPK 740


>AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical
           protein T08B2.5a protein.
          Length = 924

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 175 CYDCRRQ-SLVLYRKSPNQVSDRHHSSIQIEGTXV*AEXATGTQEEVQDSHTPSSPR 8
           C  C+R  S V   +   + SD H ++++ +      E A   QEE +D+  P  P+
Sbjct: 742 CMLCKRAFSDVEVLRKHVEKSDLHRNNLEAKRAEWGRETAAKLQEEEEDASAPDLPK 798


>AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical
           protein T08B2.5b protein.
          Length = 925

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 175 CYDCRRQ-SLVLYRKSPNQVSDRHHSSIQIEGTXV*AEXATGTQEEVQDSHTPSSPR 8
           C  C+R  S V   +   + SD H ++++ +      E A   QEE +D+  P  P+
Sbjct: 743 CMLCKRAFSDVEVLRKHVEKSDLHRNNLEAKRAEWGRETAAKLQEEEEDASAPDLPK 799


>U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical
           protein F55D10.1 protein.
          Length = 955

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
 Frame = +1

Query: 103 CGDDPIPD---LETCDTEPKIDAY 165
           CGDDPI D   +E  + + K+DA+
Sbjct: 245 CGDDPIMDNLNIEGYNVKEKVDAF 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.139    0.471 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,578
Number of Sequences: 27780
Number of extensions: 34152
Number of successful extensions: 43
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 12,740,198
effective HSP length: 39
effective length of database: 11,656,778
effective search space used: 221478782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)