Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_B20
(367 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 134 2e-32
03_01_0547 + 4093196-4093657,4094267-4095148 134 2e-32
03_01_0544 + 4082528-4082989,4083585-4084466 134 2e-32
03_01_0543 + 4076981-4077442,4078145-4079026 134 2e-32
02_02_0491 - 10896463-10897172,10897246-10897353,10897457-108975... 29 1.5
10_08_1038 - 22485394-22485960,22486712-22487197 28 2.0
11_04_0242 - 15273774-15274043,15274131-15274235 27 3.4
09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959 27 3.4
04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888 27 3.4
11_03_0079 + 9669666-9669728,9670779-9672545 27 4.5
08_01_0851 + 8383043-8383301,8384654-8384824,8384907-8386420 27 6.0
03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820... 26 7.9
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 26 7.9
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 134 bits (325), Expect = 2e-32
Identities = 63/117 (53%), Positives = 84/117 (71%)
Frame = +1
Query: 16 ANITTEVKSVEMPRGSTRSLYPVTMLVSTSKTYLVQRELRRGYVAGDSKNNPPRGAADFT 195
+ +TTEVKSVEM + + P + K V ++L+RGYVA +SK++P + AA FT
Sbjct: 271 SGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAV-KDLKRGYVASNSKDDPAKEAASFT 329
Query: 196 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGD 366
+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GD
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGD 386
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 134 bits (325), Expect = 2e-32
Identities = 63/117 (53%), Positives = 84/117 (71%)
Frame = +1
Query: 16 ANITTEVKSVEMPRGSTRSLYPVTMLVSTSKTYLVQRELRRGYVAGDSKNNPPRGAADFT 195
+ +TTEVKSVEM + + P + K V ++L+RGYVA +SK++P + AA FT
Sbjct: 271 SGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAV-KDLKRGYVASNSKDDPAKEAASFT 329
Query: 196 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGD 366
+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GD
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGD 386
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 134 bits (325), Expect = 2e-32
Identities = 63/117 (53%), Positives = 84/117 (71%)
Frame = +1
Query: 16 ANITTEVKSVEMPRGSTRSLYPVTMLVSTSKTYLVQRELRRGYVAGDSKNNPPRGAADFT 195
+ +TTEVKSVEM + + P + K V ++L+RGYVA +SK++P + AA FT
Sbjct: 271 SGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAV-KDLKRGYVASNSKDDPAKEAASFT 329
Query: 196 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGD 366
+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GD
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGD 386
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 134 bits (325), Expect = 2e-32
Identities = 63/117 (53%), Positives = 84/117 (71%)
Frame = +1
Query: 16 ANITTEVKSVEMPRGSTRSLYPVTMLVSTSKTYLVQRELRRGYVAGDSKNNPPRGAADFT 195
+ +TTEVKSVEM + + P + K V ++L+RGYVA +SK++P + AA FT
Sbjct: 271 SGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAV-KDLKRGYVASNSKDDPAKEAASFT 329
Query: 196 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGD 366
+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GD
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGD 386
>02_02_0491 -
10896463-10897172,10897246-10897353,10897457-10897558,
10897674-10897772,10898995-10899093,10900622-10900943
Length = 479
Score = 28.7 bits (61), Expect = 1.5
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 96 FNVKNVSGSKGIAPWLRCRRFEKQPTQGSCRLHSASHCAKSPRSNIKRIHT 248
F+++ + S + +L C + G CR H+A+ A++PRS + R T
Sbjct: 15 FSLRAAAASSSSSSFLPCLLLAAALSAGCCRAHAAT--ARAPRSLLARFPT 63
>10_08_1038 - 22485394-22485960,22486712-22487197
Length = 350
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +3
Query: 195 SASHCAKS--PRSNIKRIHTCIGLPHSPHSL 281
S+S CA + P NI RIH IGL SP L
Sbjct: 96 SSSSCAAAAPPSPNILRIHAPIGLARSPAHL 126
>11_04_0242 - 15273774-15274043,15274131-15274235
Length = 124
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 289 QICRLCGLCGNPIQVCI 239
QIC +C CG P VCI
Sbjct: 74 QICAVCTCCGGPHGVCI 90
>09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959
Length = 708
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = -3
Query: 359 DLMDLGLSSVDLPVRRSTFSL 297
DLM G+S V+LPVRR+ F++
Sbjct: 583 DLMYSGISMVNLPVRRNHFAV 603
>04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888
Length = 748
Score = 27.5 bits (58), Expect = 3.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 133 RRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGY 243
RRG +++ PR +A + QV+ HP +S GY
Sbjct: 175 RRGSNCVENRRRKPRSSAQSSPQVVTPRHP--VSEGY 209
>11_03_0079 + 9669666-9669728,9670779-9672545
Length = 609
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 190 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 312
FTA+ +H Q++N VLDC AH+ CK+ + E ++
Sbjct: 572 FTAENRSKSH--QVNN-VLAVLDCLQAHMECKYDMLTESLE 609
>08_01_0851 + 8383043-8383301,8384654-8384824,8384907-8386420
Length = 647
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 190 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 312
FTA+ +H Q++N +LDC AH+ CK+ + E ++
Sbjct: 610 FTAENRSKSH--QVNN-VLAILDCLQAHMECKYDMLTESLE 647
>03_05_0824 +
27980191-27980243,27980633-27980671,27980974-27982023,
27983097-27983262,27983439-27983549,27983637-27983688,
27984691-27984859,27985604-27985883
Length = 639
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 211 LNHPGQISNGYTPVLDCHTAHIACK 285
L+ P +ISNG TPV D ++ C+
Sbjct: 271 LHRPRRISNGTTPVFDDNSGSHLCQ 295
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 26.2 bits (55), Expect = 7.9
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +1
Query: 55 RGSTRSLYPVTMLVSTSKTYL---VQRELRRGYVAGDSKNNPP 174
+ +TR+ PVTML TY+ V EL G G+ N P
Sbjct: 109 KAATRTAVPVTMLQKQGGTYVGSTVMDELGFGVSGGNLHNGTP 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.130 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,837,928
Number of Sequences: 37544
Number of extensions: 223134
Number of successful extensions: 454
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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