Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_B19
         (236 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    27   0.33 
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    27   0.44 
SPAC105.02c |||ankyrin repeat protein, unknown biological role|S...    24   2.3  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    24   2.3  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    24   3.1  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    23   4.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    23   5.4  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    23   5.4  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    23   7.1  
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c...    22   9.4  
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    22   9.4  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    22   9.4  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    22   9.4  

>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 0.33
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 116 NFAVESHNKNVVEEICNLQSNLGHDSL 36
           N+ ++  N NV+ +IC   SN  HDSL
Sbjct: 97  NWYLKERNINVLSDICFPLSNNAHDSL 123


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 108 GKVALVXXXXXXXXXXXXXQFTKEGAQVAIFGRNVTK 218
           GKVALV             +  ++GA+V + GRN  K
Sbjct: 42  GKVALVTGSSGGIGYVTALELARKGAKVYLAGRNEEK 78


>SPAC105.02c |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 170

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 110 AVESHNKNVVEEICNLQSNLGHDSLNNVRQAQRN 9
           A  S+N +++EE+ + Q   G   +NN R +  N
Sbjct: 15  ACRSNNVDMLEEVVHQQEGDGVSFINNARDSLGN 48


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 112 LPLKAITRMLLRKFVTSNQISVTTHLIMSGRPN 14
           L L+   R+ ++K+ T   + V THL    +PN
Sbjct: 553 LCLEGGLRISVQKYETFEDLKVNTHLFRLDKPN 585


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = -1

Query: 122 KSNFAVESHNKNVVEEICNLQSNLGHDSLNNV 27
           K   A+ SH   + +E+     ++G D++ N+
Sbjct: 211 KKRIALHSHKAGIEDELDITSKSIGRDTIPNI 242


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 95   NKNVVEEICNLQSNLGH 45
            +K  +EEI N  SN GH
Sbjct: 1078 HKQPIEEILNYASNFGH 1094


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 202  PKIATWAPSLVNCMAVAAPIPELPP 128
            P + T AP+  +  A  AP+ +LPP
Sbjct: 1463 PGMVTNAPAPSSAPAPPAPVSQLPP 1487


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 106 LKAITRMLLRKFVTSNQISVTTHLIMSGR 20
           L+A+   LL K    N+I  T+HL   G+
Sbjct: 4   LEALQVFLLEKLNEKNEIPNTSHLEFDGK 32


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = -2

Query: 157  VAAPIPELPPVTRATLPLKAI 95
            +++P+ + PP   +++PLKA+
Sbjct: 1180 LSSPLSKTPPFFSSSVPLKAL 1200


>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 374

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 31  LLSES*PRFDWRLQIS 78
           L+++S P+F WR ++S
Sbjct: 299 LVADSCPKFQWRPEVS 314


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 85  LLRKFVTSNQISVTTHLIMSG 23
           LLRKF    QI VTT L+  G
Sbjct: 315 LLRKFSERLQIPVTTSLLGLG 335


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 151 APIPELPPVTRATLPLKAI 95
           +P+ ELP +   T+PL  +
Sbjct: 510 SPVKELPAIRPRTIPLNGV 528


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 196 IATWAPSLVNCMAVAAPIPELPPVTRATLP 107
           +AT APS+ + ++  +  P + P   +T+P
Sbjct: 276 VATSAPSVPSALSSISSTPFMKPSIPSTIP 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 850,711
Number of Sequences: 5004
Number of extensions: 12473
Number of successful extensions: 47
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)