Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_B16
(222 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0065 - 31399791-31399874,31399956-31400165,31400407-314005... 27 1.5
01_06_1745 - 39609894-39610030,39610127-39610223,39613856-396139... 27 1.5
10_06_0136 - 11114409-11114576,11114656-11114784,11114873-111150... 27 2.7
12_02_0979 - 25009721-25009975,25010058-25010127,25010216-250103... 26 3.6
06_03_0675 - 23428948-23431389 26 4.7
07_01_0182 + 1280479-1280754,1281232-1282089 25 6.2
04_04_1417 + 33421094-33421516,33421599-33421678,33421769-334219... 25 6.2
04_04_1344 + 32787574-32787632,32788488-32789070,32789211-327894... 25 6.2
01_06_1691 - 39215192-39215283,39215341-39215413,39215874-392166... 25 6.2
>03_06_0065 -
31399791-31399874,31399956-31400165,31400407-31400526,
31401166-31401225,31401670-31401879,31402512-31402587,
31403010-31403173,31403254-31403316,31403640-31403727,
31403810-31404460,31405102-31405149,31405334-31405902
Length = 780
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 171 HSFMNSSDDTMSFSSLFSVTGAAFINPIKNTTPKKSVSCILVSC 40
H F+++S++ S+L S TG + N KK SC +VSC
Sbjct: 729 HPFVHNSNNFNQHSALHSPTGLKSTDTGHNARDKK--SCKIVSC 770
>01_06_1745 -
39609894-39610030,39610127-39610223,39613856-39613996,
39614094-39614272,39615067-39615111,39615802-39615858,
39615935-39616163,39616348-39616418,39619527-39619635
Length = 354
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 93 PIKNTTPKKSVSCILVSC 40
PIKN TPK+S S + SC
Sbjct: 335 PIKNDTPKRSASYVCNSC 352
>10_06_0136 -
11114409-11114576,11114656-11114784,11114873-11115016,
11115130-11115299,11116441-11116528,11116590-11116652,
11116678-11116799,11118506-11118671
Length = 349
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 80 VFLIGLIKAAPVTENNDEKLIVSSELFI 163
V+L L+ P+TE N KLI++S +I
Sbjct: 78 VYLWTLVYLDPITEANSFKLIIASTFYI 105
>12_02_0979 -
25009721-25009975,25010058-25010127,25010216-25010381,
25010501-25010651,25010843-25010890,25011172-25011225,
25011400-25011513,25012666-25012782,25012899-25012991,
25013085-25013123,25013990-25014055
Length = 390
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 181 VRDTFVYE*FRRYYELLIIILSNW 110
+RD F+YE F Y LL++ L W
Sbjct: 48 LRDLFLYEAFLYYNPLLLVALMIW 71
>06_03_0675 - 23428948-23431389
Length = 813
Score = 25.8 bits (54), Expect = 4.7
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = -1
Query: 207 RLTNTYLGEYATHSFMNSSDDT-----MSFSSLFSVTGAAFINPIKNTTPKKSVSC 55
RLT Y G +S +N +D T M+F++L V G +N I TPK + C
Sbjct: 251 RLTLDYDGNLRLYS-LNKTDGTWLVTWMAFTNLCFVRGLCGMNGICVYTPKPACVC 305
>07_01_0182 + 1280479-1280754,1281232-1282089
Length = 377
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 214 NCKTDKYVLGGVRDTFVYE*FRRYYE 137
N + K +GG+RD E F+ Y+E
Sbjct: 140 NYASKKVFIGGLRDNITEEEFKTYFE 165
>04_04_1417 +
33421094-33421516,33421599-33421678,33421769-33421904,
33422043-33422195,33422401-33422489,33423004-33423066,
33424401-33424485,33425172-33425378
Length = 411
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 80 VFLIGLIKAAPVTENNDEKLIVSSELFINECVA 178
VFL+ LI + + + L+ ++ ++N+CVA
Sbjct: 191 VFLLELISGRKPVDGSHKSLLAWAKPYLNDCVA 223
>04_04_1344 +
32787574-32787632,32788488-32789070,32789211-32789423,
32789884-32790173,32791201-32791312,32791394-32791630,
32791714-32792394
Length = 724
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 89 IGLIKAAPVTENNDEKLI 142
+GL+K P+ EN DE+L+
Sbjct: 493 LGLVKRVPLFENMDERLL 510
>01_06_1691 -
39215192-39215283,39215341-39215413,39215874-39216615,
39216730-39217985,39218080-39218187,39218289-39218474,
39218625-39218675
Length = 835
Score = 25.4 bits (53), Expect = 6.2
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -1
Query: 147 DTMSFSSLFSVTGAAFINPIKNTTPKKSVSCILVSC 40
D MS L S T A ++ + T ++SVSC+LV C
Sbjct: 669 DIMSTPGLIS-TLAMLLDTGEPTEQEQSVSCLLVMC 703
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,452,264
Number of Sequences: 37544
Number of extensions: 78762
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 14,793,348
effective HSP length: 53
effective length of database: 12,803,516
effective search space used: 256070320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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