Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_B16
         (222 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   1.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   4.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    19   5.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    19   7.2  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 1.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 113 LVPLLSIRLKTRHLRSL*AASWYLVKLRT 27
           L+ L ++ L T  +  L A  W L ++RT
Sbjct: 450 LIVLTALGLPTNDISLLFAVDWMLDRIRT 478


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 19.8 bits (39), Expect = 4.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -1

Query: 204 LTNTYLGEYATHSFMNSSDDTM 139
           + N Y+G  AT +    SD+ +
Sbjct: 296 VVNNYMGPVATKAMKGYSDEDL 317


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 46  ILLNSAHRMICLNLV 2
           +LLN   +MICL +V
Sbjct: 393 VLLNFGWQMICLIVV 407


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 19.0 bits (37), Expect = 7.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 168 NVSRTPPSTYLSV 206
           N +R PP+ +LSV
Sbjct: 155 NGTRQPPNNWLSV 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,115
Number of Sequences: 438
Number of extensions: 851
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3407265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)