Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_B14
(235 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 39 1e-04
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 1.3
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 25 1.8
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 24 3.1
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 23 4.1
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 23 4.1
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 23 7.1
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe... 23 7.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 23 7.1
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 22 9.4
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces... 22 9.4
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 22 9.4
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 38.7 bits (86), Expect = 1e-04
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +2
Query: 20 TSRRVPDNE-PTITYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEIPNCF 196
TS VP+ E P I V+ + L VM I+KHC +S NM G L+G+ ++ L++ + F
Sbjct: 5 TSLNVPELESPPIERVELESLLVMNIIKHC-RDSFPNMGTI-GQLVGIDIDGVLQVSSSF 62
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.0 bits (52), Expect = 1.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 20 TSRRVPDNEPTITYVQCD 73
T+R +P N+PT + CD
Sbjct: 405 TTRSIPANKPTFFWASCD 422
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 24.6 bits (51), Expect = 1.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 5 EGRGGTSRRVPDNEPTITYVQCDGLAVMKIVKHCHEESCSNMEV 136
+GRGG +R +P ++ CDG V + +KH +N +V
Sbjct: 151 QGRGG--KRFAKEKPCLS---CDGKGVKQHLKHVGPHHVTNSQV 189
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 23.8 bits (49), Expect = 3.1
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Frame = -3
Query: 215 IMLRKKGSNWVSLNDSPQLNPVR-----HLEPPPYY 123
+++ K G + +LND PQLN H PPY+
Sbjct: 574 LVIDKPGFVYHTLNDIPQLNSSTIGSYVHSHNPPYF 609
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 23.4 bits (48), Expect = 4.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 232 SSSIVSSCFGKKEAIGYL*TILHN*TQ*GTLSHLHI 125
+S S GK A+GY+ T LH Q GT +H+ +
Sbjct: 334 TSGCPSPTLGKNIAMGYISTGLH---QVGTPAHIKV 366
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = +2
Query: 29 RVPDNEPTITYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVEN 172
R PD ++ + + ++ + C E NME +L L V+N
Sbjct: 493 RFPDFSTLDIKIKLNLVRLISAIISCGCEEIENMESKMSTILSLAVQN 540
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 128 MEVAQGALLGLVVEN 172
MEVA+G LLG ++++
Sbjct: 790 MEVAEGTLLGEIIQS 804
>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 149 LLGLVVENRLEIPNCFLF 202
LL ++ + L++PNCF F
Sbjct: 417 LLQILEDYELDMPNCFSF 434
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 14 GGTSRRVPDNEPTIT 58
GG P NEPT+T
Sbjct: 835 GGNPTAAPTNEPTVT 849
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/32 (25%), Positives = 17/32 (53%)
Frame = +2
Query: 35 PDNEPTITYVQCDGLAVMKIVKHCHEESCSNM 130
P+N + V+ +G+ V K+ HE+ ++
Sbjct: 614 PNNADIVEMVERNGIVVPKVTVTSHEDDVDSV 645
>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 338
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -3
Query: 200 KGSNWVSLNDSPQLNPVRHLEPPPYY 123
+G W+ S +NP++ L P +Y
Sbjct: 109 EGIQWLKAIFSTLINPIQALTHPTFY 134
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/23 (30%), Positives = 12/23 (52%)
Frame = +2
Query: 62 VQCDGLAVMKIVKHCHEESCSNM 130
VQC +HCH ++C ++
Sbjct: 151 VQCFDCHEWYTCRHCHNDACDHV 173
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,107,126
Number of Sequences: 5004
Number of extensions: 19721
Number of successful extensions: 45
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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