Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_B14
(235 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 47 2e-06
03_02_0249 - 6792210-6792215,6794332-6794607,6794692-6795180,679... 27 2.8
02_02_0211 + 7898434-7898574,7898759-7899349,7899575-7899821,790... 27 2.8
01_06_1507 - 37838645-37839311,37839393-37839499,37839588-378396... 26 3.7
01_01_0146 - 1329804-1330259,1331029-1331060,1331164-1331398 26 3.7
12_01_0429 - 3390096-3390209,3390305-3390547 26 4.9
05_07_0100 + 27679280-27680320 26 4.9
02_04_0310 - 21932418-21932531,21932627-21932869 26 4.9
12_01_0072 + 609254-609722,610355-610421,610652-610745,610984-61... 25 6.5
06_03_0421 - 20600878-20600924,20601275-20601470,20601557-206017... 25 6.5
09_04_0324 - 16686872-16687074,16687479-16687521,16687735-166880... 25 8.6
08_02_1350 - 26312275-26313613,26314833-26315110 25 8.6
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311... 25 8.6
01_07_0170 - 41670694-41671634,41672014-41672982,41673050-41673605 25 8.6
01_01_0034 - 269356-270333,270809-270897,273621-273957 25 8.6
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 46.8 bits (106), Expect = 2e-06
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +2
Query: 32 VPDNEPT-ITYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEIPNCFLF 202
V + P+ + VQ +GLAV+KI+KHC E + + + G LLGL V + LE+ NCF F
Sbjct: 24 VTEEAPSPLRVVQMEGLAVLKIIKHCEEFAPA---LVTGQLLGLDVGSVLEVTNCFPF 78
>03_02_0249 -
6792210-6792215,6794332-6794607,6794692-6795180,
6795832-6795900,6797316-6797403,6798193-6798224,
6799277-6799308,6799412-6799646
Length = 408
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = +2
Query: 2 HEGRGGTSRRVPDNEPTITYV-----QCDGLAVMKIVKHCHEESCSNME 133
H GR G++ ++PT+T + + D V K + H + CS E
Sbjct: 51 HSGRQGSNESTTQSQPTVTVIEDLKLEIDCQHVKKNIAHSPGQQCSPSE 99
>02_02_0211 +
7898434-7898574,7898759-7899349,7899575-7899821,
7900020-7900118,7900158-7900321,7900371-7900870,
7901007-7901256,7901461-7901549,7901823-7902064,
7902175-7902479,7902798-7902906,7903150-7903313
Length = 966
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 133 GGSRCLTGFSCGESFRDTQLLPFFRSMMTQ 222
G +C+TGF+ E+F++ FFRS+ T+
Sbjct: 44 GRPQCMTGFNLPENFKEIP-EAFFRSVRTR 72
>01_06_1507 - 37838645-37839311,37839393-37839499,37839588-37839663,
37839747-37839869,37840051-37840208,37840311-37840385,
37840466-37840506,37840594-37840670,37840755-37840883,
37840990-37841060,37841237-37841332,37841489-37841584,
37841681-37841953,37842871-37842957,37843101-37843178,
37843350-37843514,37843622-37843768,37843921-37843983,
37844082-37844201,37844352-37844543,37844672-37844748,
37845094-37845196,37845684-37845887
Length = 1074
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 203 KKGSNWVSLNDSPQLNPVRHLEPPPY 126
+ G N + +P P R+ +PPPY
Sbjct: 975 QSGGNSYQSHSAPSAGPGRYAQPPPY 1000
>01_01_0146 - 1329804-1330259,1331029-1331060,1331164-1331398
Length = 240
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 2 HEGRGGTSRRVPDNEPTITYVQCDGLAVMKIV 97
H GR G++ ++PT+T ++ L + K+V
Sbjct: 203 HSGRQGSNESTTQSQPTVTVIEDLKLEIGKLV 234
>12_01_0429 - 3390096-3390209,3390305-3390547
Length = 118
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +2
Query: 2 HEGRGGTSRRVPDNEPTITYVQCDGLAVMKIV 97
H GR G++ ++PT+T ++ L + K++
Sbjct: 51 HSGRQGSNESTTQSQPTVTVIEDLKLEIGKLI 82
>05_07_0100 + 27679280-27680320
Length = 346
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 182 SLNDSPQLNPVRHLEPPPYYCMILHGSA 99
S SP +PV PPPY+ M +H SA
Sbjct: 138 SKRPSPSPSPV---PPPPYFAMPIHPSA 162
>02_04_0310 - 21932418-21932531,21932627-21932869
Length = 118
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +2
Query: 2 HEGRGGTSRRVPDNEPTITYVQCDGLAVMKIV 97
H GR G++ ++PT+T ++ L + K++
Sbjct: 51 HSGRQGSNESTTQSQPTVTVIEDLKLEIGKLI 82
>12_01_0072 +
609254-609722,610355-610421,610652-610745,610984-611127
Length = 257
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 183 ISKRFSTTKPSKAP*ATSILLHDSSWQCLTIFITA 79
+SK S T + AP + L SSW LT+ I A
Sbjct: 75 VSKPSSATGETAAPQSNLCALRCSSWDFLTLAIAA 109
>06_03_0421 -
20600878-20600924,20601275-20601470,20601557-20601757,
20604573-20604761
Length = 210
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 104 CHEESCSNMEVAQGALLGLVVEN 172
C+ SCS + ALLGL V+N
Sbjct: 188 CYTYSCSKAKQRWAALLGLAVKN 210
>09_04_0324 -
16686872-16687074,16687479-16687521,16687735-16688068,
16688190-16688854
Length = 414
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = +3
Query: 132 RW-LKVPYWV*LWRIV*RYP 188
RW VP WV LWR+ YP
Sbjct: 23 RWDTPVPQWVILWRVPRVYP 42
>08_02_1350 - 26312275-26313613,26314833-26315110
Length = 538
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 55 YLRSMRWIGGNE-NS*ALP*RIMQ*YGGGSRCLTGFSCGES 174
Y+++M GG+ +S +P R+ Q +G S SCGE+
Sbjct: 273 YIKTMEREGGDGMSSSQIPPRLTQHHGSCSSASAKISCGEN 313
>04_03_0181 -
12327281-12328620,12330922-12331015,12331079-12331183,
12331404-12332592,12333268-12333461
Length = 973
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/32 (25%), Positives = 19/32 (59%)
Frame = +2
Query: 20 TSRRVPDNEPTITYVQCDGLAVMKIVKHCHEE 115
TS+ ++EP++ + + + ++ I H HE+
Sbjct: 306 TSKEEKEDEPSMQFEESESISTPSIEDHLHEQ 337
>01_07_0170 - 41670694-41671634,41672014-41672982,41673050-41673605
Length = 821
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 116 SCSNMEVAQGALLGLVVENRLEIPNCFLFSE 208
+C N+E G++ L+ L++ CFL E
Sbjct: 286 ACHNLEKLPGSIGSLLKLEYLDLSECFLLEE 316
>01_01_0034 - 269356-270333,270809-270897,273621-273957
Length = 467
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 38 DNEPTITYVQCDGLAVMKIVKHC 106
D + T+T + C G+ V + HC
Sbjct: 138 DMDNTVTQLGCGGMVVCTAISHC 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,635,822
Number of Sequences: 37544
Number of extensions: 145802
Number of successful extensions: 321
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 14,793,348
effective HSP length: 56
effective length of database: 12,690,884
effective search space used: 266508564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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