Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_B14
(235 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003740-3|AAC48137.2| 365|Caenorhabditis elegans Eukaryotic in... 40 2e-04
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 25 7.2
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 25 7.2
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 25 7.2
Z79598-5|CAB01863.1| 367|Caenorhabditis elegans Hypothetical pr... 25 9.5
U29612-11|AAO61438.1| 523|Caenorhabditis elegans P21-activated ... 25 9.5
U29612-9|AAL65775.1| 569|Caenorhabditis elegans P21-activated k... 25 9.5
D83215-1|BAA11844.1| 569|Caenorhabditis elegans protein kinase ... 25 9.5
AL117203-8|CAB55110.1| 376|Caenorhabditis elegans Hypothetical ... 25 9.5
AL023828-16|CAA19461.1| 364|Caenorhabditis elegans Hypothetical... 25 9.5
AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin recep... 25 9.5
AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal daue... 25 9.5
>AF003740-3|AAC48137.2| 365|Caenorhabditis elegans Eukaryotic
initiation factor protein3.H protein.
Length = 365
Score = 40.3 bits (90), Expect = 2e-04
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Frame = +2
Query: 23 SRRVPDNEPTITYVQCDGLAVMKIVKHCHEESCSNM-----EVAQGALLGLVV--ENRLE 181
S V P++ ++ D L VMKIVKH E + + + G L GLV ++RLE
Sbjct: 2 STAVTITAPSVKHILLDSLVVMKIVKHVDSELHAGISEVSGDACAGVLTGLVFLEDSRLE 61
Query: 182 IPNCF 196
I NCF
Sbjct: 62 ITNCF 66
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -3
Query: 158 NPVRHLEPPPYYCMILHGSA*LFSLPPIHRI 66
NP + PPP C+ L L+ P+H++
Sbjct: 135 NPQNEVLPPPKLCVDLRAPHNLWRAEPMHQL 165
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 25.0 bits (52), Expect = 7.2
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Frame = +2
Query: 65 QCDGLAVMKIVKHCHEESCS------NME-VAQ--GALLGLVVENRLEIPNCFLF 202
QCD AV+K +K EE CS N+E +A+ G +V ++ +++ NC F
Sbjct: 3521 QCDIQAVVKSLKSIVEEHCSGEKRRKNLEGLAELAGITADIVEQSVIQLTNCLGF 3575
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -3
Query: 158 NPVRHLEPPPYYCMILHGSA*LFSLPPIHRI 66
NP + PPP C+ L L+ P+H++
Sbjct: 135 NPQNEVLPPPKLCVDLRAPHNLWRAEPMHQL 165
>Z79598-5|CAB01863.1| 367|Caenorhabditis elegans Hypothetical
protein C44H4.6 protein.
Length = 367
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 17 GTSRRVPDNEPTITYV 64
G+++R+ NEP ITY+
Sbjct: 179 GSAKRLEKNEPNITYI 194
>U29612-11|AAO61438.1| 523|Caenorhabditis elegans P21-activated
kinase family protein1, isoform c protein.
Length = 523
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = -3
Query: 197 GSNWVS--LNDSPQLNPVRHLEPPPY 126
G W+ +ND+P P L+P PY
Sbjct: 84 GQKWLQYDMNDAPSRTPSYGLKPQPY 109
>U29612-9|AAL65775.1| 569|Caenorhabditis elegans P21-activated
kinase family protein1, isoform b protein.
Length = 569
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = -3
Query: 197 GSNWVS--LNDSPQLNPVRHLEPPPY 126
G W+ +ND+P P L+P PY
Sbjct: 130 GQKWLQYDMNDAPSRTPSYGLKPQPY 155
>D83215-1|BAA11844.1| 569|Caenorhabditis elegans protein kinase
protein.
Length = 569
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = -3
Query: 197 GSNWVS--LNDSPQLNPVRHLEPPPY 126
G W+ +ND+P P L+P PY
Sbjct: 130 GQKWLQYDMNDAPSRTPSYGLKPQPY 155
>AL117203-8|CAB55110.1| 376|Caenorhabditis elegans Hypothetical
protein Y48C3A.11 protein.
Length = 376
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 183 ISKRFSTTKPSKAP*ATSILLHDSSWQCLTIFIT 82
I + F+T P +P A SI HD+ + TI IT
Sbjct: 330 IGRIFATMCPPPSPVAASISGHDALLEHNTIIIT 363
>AL023828-16|CAA19461.1| 364|Caenorhabditis elegans Hypothetical
protein Y17G7B.14 protein.
Length = 364
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 89 KIVKHCHEESCSNMEV 136
K+ K CH E CSN ++
Sbjct: 258 KVEKSCHVEFCSNSQI 273
>AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin receptor
homolog protein.
Length = 1846
Score = 24.6 bits (51), Expect = 9.5
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +2
Query: 68 CDGLAVMKIVKHCHEE 115
CDG+A ++ +K CH +
Sbjct: 1373 CDGMAYLESLKFCHRD 1388
>AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal dauer
formation protein 2 protein.
Length = 1843
Score = 24.6 bits (51), Expect = 9.5
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +2
Query: 68 CDGLAVMKIVKHCHEE 115
CDG+A ++ +K CH +
Sbjct: 1370 CDGMAYLESLKFCHRD 1385
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,191,426
Number of Sequences: 27780
Number of extensions: 114790
Number of successful extensions: 273
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,740,198
effective HSP length: 57
effective length of database: 11,156,738
effective search space used: 223134760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -