Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_B13
         (442 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0274 - 2119122-2119775,2121457-2121570,2121895-2122203,212...    29   1.7  
07_03_0906 + 22481456-22481802,22482105-22482186,22482299-224824...    28   3.8  
12_02_0585 + 20824752-20825954,20826141-20826329,20826533-208266...    27   5.1  
04_01_0358 - 4692079-4692567                                           27   5.1  
07_03_1692 - 28733184-28733980,28734306-28734373,28734481-287345...    27   6.7  
01_06_0376 - 28863574-28863594,28863758-28864357,28865303-28865812     27   6.7  
10_07_0190 + 13931399-13931600,13931720-13932003,13932158-13933303     27   8.8  
04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628     27   8.8  

>05_01_0274 -
           2119122-2119775,2121457-2121570,2121895-2122203,
           2123743-2123904,2124046-2124129,2124315-2124500
          Length = 502

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -1

Query: 442 DVARSATTDPPSAAITCTSLSDSSQKCGHGNAGGYTQRESCTRTACRRA 296
           +V+ S  +  P+AA T T L+  S   G  N GG  Q  +     CR+A
Sbjct: 188 NVSPSLGSKRPAAAATLTRLTPESGSGGENNGGG-EQAPAAEMAPCRKA 235


>07_03_0906 +
           22481456-22481802,22482105-22482186,22482299-22482400,
           22483005-22483315,22483948-22484044,22484522-22484696,
           22485074-22485150,22485632-22486027,22486254-22486303,
           22487315-22487382,22488142-22488701
          Length = 754

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 122 TEQVREAGGCRRYVCLEPCGGRQPHHLQ 39
           T   R   GC   VC++P  G+ P H Q
Sbjct: 610 TRHPRHRPGCSCIVCIQPPSGKGPKHKQ 637


>12_02_0585 +
           20824752-20825954,20826141-20826329,20826533-20826690,
           20826913-20827009,20827368-20827730,20829225-20829303,
           20830180-20830286
          Length = 731

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 185 VVAGLLDESPGAAVM-VSM*EVTEQVRE-AGGCRRYVCLEPCGGR 57
           +V  L+  +P    M V++ E  E+ RE       Y+C+  CGGR
Sbjct: 593 LVCALIASAPALEKMIVALHESYEETRERTNNMEAYLCIPSCGGR 637


>04_01_0358 - 4692079-4692567
          Length = 162

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 19  SAWSPSPCKWCGCRPPHGSRHT*RRHPPASR 111
           S+  P+PC W   RPP  S H  +  PP SR
Sbjct: 66  SSSQPAPCSWSRIRPP-TSMHQ-QIQPPLSR 94


>07_03_1692 -
           28733184-28733980,28734306-28734373,28734481-28734594,
           28734835-28734884,28735012-28735422,28735534-28735610,
           28736083-28736257,28736843-28736939,28737070-28737833,
           28737900-28738001,28738093-28738174,28739004-28739161
          Length = 964

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 122 TEQVREAGGCRRYVCLEPCGGRQPHH 45
           T+  R   GC   VC++P  G+ P H
Sbjct: 746 TKHPRHRPGCTCIVCIQPPSGKGPKH 771


>01_06_0376 - 28863574-28863594,28863758-28864357,28865303-28865812
          Length = 376

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 197 APRSVVAGLLDESPGAAVMVSM*EVTEQVREAGGCRRYVCLEPCGGRQPHHL-QGD 33
           A R + A LL  +PG+A +V+  E    V  +    R + L  CG  + + L QGD
Sbjct: 320 AARLIPAVLLSVTPGSAAVVAYAESRRGVPVSRSLARILALAMCGFFECYRLRQGD 375


>10_07_0190 + 13931399-13931600,13931720-13932003,13932158-13933303
          Length = 543

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 4   NSARGSAWSPSPCKWCGCRPPHG 72
           N+A  S W+P PC    C P  G
Sbjct: 260 NAAGASNWAPRPCNCRECAPAAG 282


>04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628
          Length = 132

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +1

Query: 61  PPHGSRHT*RRHPPASRTCSVTSHIDTMTAAPGLSS 168
           PP  +RHT  R   A RTC V       T   G +S
Sbjct: 34  PPKPARHTGPRSHIAVRTCHVNDETSRSTCRNGATS 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,897,224
Number of Sequences: 37544
Number of extensions: 205174
Number of successful extensions: 755
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)