Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_B13
         (442 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00049-6|AAM22030.1|  711|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF100656-7|AAF99964.2|  615|Caenorhabditis elegans Hypothetical ...    27   4.6  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical ...    27   8.0  

>U00049-6|AAM22030.1|  711|Caenorhabditis elegans Hypothetical
           protein C18F10.2 protein.
          Length = 711

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 124 TSHIDTMTAAPGLSSRRP--ATTLRGATRFRTHVVR 225
           T HI+ MT   G  S RP  +T L G+T+  + ++R
Sbjct: 432 TEHIEDMTEGSGQESDRPTDSTKLYGSTQSPSEIIR 467


>AF100656-7|AAF99964.2|  615|Caenorhabditis elegans Hypothetical
           protein F49F1.8 protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 88  RRHPPASRTCSVTSHIDTMTAAPGLSSRRPATTLRGATRFRTHV 219
           +  PP   T   +SH+  + A   L ++  AT+   +TR R  +
Sbjct: 4   KEEPPPPGTLQTSSHLPILHAVETLKAKSTATSQAASTRAREQI 47


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +1

Query: 103  ASRTCSVTSHIDTMTAAPGLSSRRPATTLRGATRFRTHVVRG 228
            A+        +DT T  P   +R PAT  RG  R R    RG
Sbjct: 2290 ATNAPETNKDMDTSTPKPAPVTRSPATRGRGGGRKRNSGARG 2331


>AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical
           protein F53H1.3 protein.
          Length = 554

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = +1

Query: 304 GTLFACRTPAACT---RLRYRGHI 366
           GTL +CR PAAC      R  GH+
Sbjct: 179 GTLISCRLPAACDLPYEFRLDGHV 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,910,799
Number of Sequences: 27780
Number of extensions: 133664
Number of successful extensions: 433
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)