Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_B12
         (176 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    30   0.035
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    28   0.19 
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    24   3.1  
SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual        23   4.1  
SPAC3H8.03 |||mitochondrial ribosomal protein subunit Img2|Schiz...    22   9.4  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    22   9.4  

>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 30.3 bits (65), Expect = 0.035
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 100 YGD-QKPPFSYIALTAMAIWSSPERM 174
           YGD +KPP+SY  + A AI SS E M
Sbjct: 218 YGDNKKPPYSYSVMIAQAILSSSECM 243


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 27.9 bits (59), Expect = 0.19
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 109 QKPPFSYIALTAMAIWSSPER 171
           +KPP+SY  L  M+I  SP+R
Sbjct: 127 KKPPYSYAMLIGMSIIRSPDR 147


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 73  IMPRPTRESYGDQKPPFSYIALTAMA 150
           + P P   +Y D+  P+ ++A  A A
Sbjct: 674 VFPPPNARAYADESYPWEFLAACATA 699


>SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 73  IMPRPTRESYGDQKPPFSYIALTAMAIWSSPE 168
           I+P    E +GD    FS+++ T M I++ PE
Sbjct: 129 IIPHKDLEMFGDGVAIFSFLSNTTM-IFTHPE 159


>SPAC3H8.03 |||mitochondrial ribosomal protein subunit
           Img2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 70  PADVYVNNVTSVVNCFRRHVSLV 2
           P DVYVN +T+ V     H+  V
Sbjct: 74  PKDVYVNKLTNQVVLKGNHIVTV 96


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 79  PRPTRESYGDQKPPFSY 129
           P  T E YGD  PP SY
Sbjct: 179 PVLTVEFYGDAPPPESY 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 651,556
Number of Sequences: 5004
Number of extensions: 8158
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 39
effective length of database: 2,167,322
effective search space used: 41179118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)